Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

32721577 .. 32722766

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG186000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGATGAAGGATAAATCTGGACAGCTGAGGAACTCTAGCAAGAAGTCAATGACGGATTCACAGAGGTGTGTTGTGCAAAGATCTAGTTCTAGAGATGGGAGTTGCTCAAGTTTTACTGGTTCTAGTAGAAGATACGACAATGAAAATTATGTTCCGAAGGGCACCGGCCACCATAGACCTTCAGGTGAAGAGAACGCTTACTTGAAGGACTTCAATCACAGGAAGAACAAGAAGTATTGTATTGAATCTGATGGAGAATTGTTGCATATGGATGGAGATACGGATAGAGATATATACAATGGTCACAGAAGGAAAAGCGCAAGACAAGAAAACAGGGACCACAAGAACAAAACATATGAAACTGATGCCGATGGGCATTTATTGGAGAGGGGACAGAACAGGGTAACTGATCATGGTAGCACCAGGAAAAGCTCAAGCCAACGACGAAAAGTAGGAGTGCATCATGATTACGGTGATTGTGAGAAAAAAGTTCATAAAGTTGGTGGAGATTGGTCAACTAGAGAGAGAGAATCATACCATGACTGCAGGAGAAGTTCAGGACACAAGAGGAAAGCGGGATATGCAGATAATCACAAGGACCGTAAGAGTAATGCTCATGATTCAGATGGAGAGTGGTCAGACAGCAACAGGAACGGTGATGAGCCCCATACAATAAGGAAAAGCTTGGTGCATATTGGCAATGCTTCTAATAGCTTAAAGCAACAGGAAAGTTCCGCCAGGTCTTGTACTGCTGAAATGAGTGAAGAAATGTTGGACAAAGATGCAGAAAAAGACTCTAGTCATGCTAGCAAACGATCAAAGCACTGGGATAAAGTGGCAGATAAATCAGATGGTGATCGAGCCCTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

290

Amino Acids

33.05

Weight (kDa)

9.13

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	2 cut(s)	575, 735
AcoI	YGGCCR	1 cut(s)	166
AcuI	CTGAAG	1 cut(s)	165
AfaI	GTAC	1 cut(s)	748
AgsI	TTSAA	3 cut(s)	205, 214, 245
AjnI	CCWGG	3 cut(s)	422, 737, 864
AleI	CACNNNNGTG	1 cut(s)	64
AluBI	AGCT	4 cut(s)	25, 432, 684, 714
AluI	AGCT	4 cut(s)	25, 432, 684, 714
AoxI	GGCC	1 cut(s)	166
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	337, 598
AsuHPI	GGTGA	4 cut(s)	197, 485, 668, 866
AsuNHI	GCTAGC	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	337, 598
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	161
BanII	GRGCYC	2 cut(s)	666, 865
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	6 cut(s)	89, 245, 266, 365, 620, 845
BciT130I	CCWGG	3 cut(s)	424, 739, 866
BclI	TGATCA	1 cut(s)	409
BfaI	CTAG	7 cut(s)	36, 84, 90, 123, 519, 798, 807
BfmI	CTRYAG	1 cut(s)	544
BglII	AGATCT	1 cut(s)	80
Bme1390I	CCNGG	3 cut(s)	424, 739, 866
Bme18I	GGWCC	2 cut(s)	337, 598
BmgT120I	GGNCC	2 cut(s)	337, 598
BmiI	GGNNCC	2 cut(s)	163, 338
BmrFI	CCNGG	3 cut(s)	424, 739, 866
BmrI	ACTGGG	1 cut(s)	835
BmsI	GCATC	3 cut(s)	355, 469, 772
BmtI	GCTAGC	1 cut(s)	810
BmuI	ACTGGG	1 cut(s)	835
BoxI	GACNNNNGTC	1 cut(s)	798
BplI	GAGNNNNNCTC	2 cut(s)	598, 630
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	91, 418
BsaBI	GATNNNNATC	1 cut(s)	855
BsaJI	CCNNGG	1 cut(s)	864
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	121, 830
Bse3DI	GCAATG	1 cut(s)	706
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	3 cut(s)	424, 739, 866
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	1 cut(s)	277
BseJI	GATNNNNATC	1 cut(s)	855
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	121, 830
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	2 cut(s)	350, 405
BsmFI	GGGAC	2 cut(s)	350, 405
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	3 cut(s)	164, 666, 865
Bsp143I	GATC	4 cut(s)	80, 409, 815, 856
BspACI	CCGC	2 cut(s)	575, 735
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	18
BspHI	TCATGA	2 cut(s)	463, 616
BspLI	GGNNCC	2 cut(s)	163, 338
BspMAI	CTGCAG	1 cut(s)	548
BspOI	GCTAGC	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	706
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	121, 830
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	4 cut(s)	80, 409, 815, 856
Bst2UI	CCWGG	3 cut(s)	424, 739, 866
Bst4CI	ACNGT	3 cut(s)	473, 602, 656
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	4 cut(s)	83, 412, 818, 859
BstMBI	GATC	4 cut(s)	80, 409, 815, 856
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	3 cut(s)	424, 739, 866
BstPAI	GACNNNNGTC	1 cut(s)	798
BstSCI	CCNGG	3 cut(s)	422, 737, 864
BstSFI	CTRYAG	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	1 cut(s)	808
CciI	TCATGA	2 cut(s)	463, 616
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	337, 598
Csp6I	GTAC	1 cut(s)	747
CviAII	CATG	5 cut(s)	413, 464, 539, 617, 803
CviJI	RGCY	8 cut(s)	25, 168, 432, 438, 664, 684, 714, 863
CviKI_1	RGCY	8 cut(s)	25, 168, 432, 438, 664, 684, 714, 863
CviQI	GTAC	1 cut(s)	747
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	82, 411, 817, 858
DpnII	GATC	4 cut(s)	80, 409, 815, 856
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	724
Eco24I	GRGCYC	2 cut(s)	666, 865
Eco47I	GGWCC	2 cut(s)	337, 598
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	422, 737, 864
EcoT38I	GRGCYC	2 cut(s)	666, 865
FaeI	CATG	5 cut(s)	416, 467, 542, 620, 806
FaqI	GGGAC	2 cut(s)	350, 405
FatI	CATG	5 cut(s)	412, 463, 538, 616, 802
FauI	CCCGC	1 cut(s)	568
FauNDI	CATATG	2 cut(s)	267, 355
FbaI	TGATCA	1 cut(s)	409
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	2 cut(s)	666, 865
FspBI	CTAG	7 cut(s)	36, 84, 90, 123, 519, 798, 807
GlaI	GCGC	1 cut(s)	319
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	5 cut(s)	416, 467, 542, 620, 806
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	5 cut(s)	56, 245, 530, 620, 794
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	4 cut(s)	197, 485, 668, 866
Hpy166II	GTNNAC	1 cut(s)	516
Hpy188I	TCNGA	5 cut(s)	156, 250, 625, 640, 850
Hpy188III	TCNNGA	5 cut(s)	18, 90, 464, 558, 617
Hpy8I	GTNNAC	1 cut(s)	516
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	4 cut(s)	151, 189, 199, 303
HpyCH4III	ACNGT	3 cut(s)	473, 602, 656
HpyCH4V	TGCA	7 cut(s)	76, 265, 460, 546, 584, 691, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	5 cut(s)	416, 467, 542, 620, 806
HspAI	GCGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	80, 409, 815, 856
LweI	GCATC	3 cut(s)	355, 469, 772
MaeI	CTAG	7 cut(s)	36, 84, 90, 123, 519, 798, 807
MaeIII	GTNAC	2 cut(s)	302, 403
MalI	GATC	4 cut(s)	82, 411, 817, 858
MboI	GATC	4 cut(s)	80, 409, 815, 856
MboII	GAAGA	4 cut(s)	141, 200, 235, 776
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	3 cut(s)	164, 666, 865
MluCI	AATT	2 cut(s)	145, 257
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	753
MnlI	CCTC	4 cut(s)	21, 57, 381, 561
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	716
MslI	CAYNNNNRTG	2 cut(s)	64, 270
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	3 cut(s)	424, 739, 866
MvaI	CCWGG	3 cut(s)	424, 739, 866
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeI	CATATG	2 cut(s)	267, 355
NdeII	GATC	4 cut(s)	80, 409, 815, 856
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	5 cut(s)	416, 467, 542, 620, 806
NlaIV	GGNNCC	2 cut(s)	163, 338
NmuCI	GTSAC	1 cut(s)	302
OliI	CACNNNNGTG	1 cut(s)	64
PagI	TCATGA	2 cut(s)	463, 616
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	56, 245, 530, 620
PleI	GAGTC	1 cut(s)	788
PpsI	GAGTC	1 cut(s)	788
PshAI	GACNNNNGTC	1 cut(s)	798
Psp6I	CCWGG	3 cut(s)	422, 737, 864
PspGI	CCWGG	3 cut(s)	422, 737, 864
PspN4I	GGNNCC	2 cut(s)	163, 338
PspPI	GGNCC	2 cut(s)	337, 598
PstI	CTGCAG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	748
RsaNI	GTAC	1 cut(s)	747
RseI	CAYNNNNRTG	2 cut(s)	64, 270
SaqAI	TTAA	1 cut(s)	716
Sau3AI	GATC	4 cut(s)	80, 409, 815, 856
Sau96I	GGNCC	2 cut(s)	337, 598
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	3 cut(s)	424, 739, 866
SduI	GDGCHC	3 cut(s)	164, 666, 865
SetI	ASST	8 cut(s)	27, 68, 181, 187, 434, 686, 716, 743
SfaNI	GCATC	3 cut(s)	355, 469, 772
SfcI	CTRYAG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	337, 598
SmiMI	CAYNNNNRTG	2 cut(s)	64, 270
SmlI	CTYRAG	2 cut(s)	106, 433
SmoI	CTYRAG	2 cut(s)	106, 433
Sse9I	AATT	2 cut(s)	145, 257
SsiI	CCGC	2 cut(s)	575, 735
SspMI	CTAG	7 cut(s)	36, 84, 90, 123, 519, 798, 807
StyD4I	CCNGG	3 cut(s)	422, 737, 864
TaaI	ACNGT	3 cut(s)	473, 602, 656
TaqI	TCGA	1 cut(s)	859
TasI	AATT	2 cut(s)	145, 257
TatI	WGTACW	1 cut(s)	746
TfiI	GAWTC	4 cut(s)	56, 245, 530, 620
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TscAI	CASTG	1 cut(s)	830
TseFI	GTSAC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	4 cut(s)	20, 156, 372, 482
TspGWI	ACGGA	2 cut(s)	68, 296
TspRI	CASTG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	337, 598
XbaI	TCTAGA	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	7 cut(s)	36, 84, 90, 123, 519, 798, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.