Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

9667810 .. 9673438

Gene Structure 5629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG059200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGGGTAGACCAGAAACTCCAGATCAAAAGGGATTGATAGCTCGGCCTCAATGCTTGAGATCTAAAACAAAGATAATCCGTGACTTGTCATCGAGAAATCGACCAAGTGGTGCAGAGTTGACAAGGACAGAAAGTGGTATGGGCAAACAATATACAATAAAGCATGATGTTAATGGAAACACACATAGGAGGAAACTTGACTATGTTGATGCTAGCCTTGGTGCTTTCCCGCGAAGTGCCTCCGCTATTTCAGAAGAATTGGCTTCAAATATGCAGCAAGTTTCACAGGGTTCGCGCATCAATAATATTCAAGAGAAGTTTGAGAGTGATCTTCAGTCTCATATAAAGTTCCATTTCATGTCCATTGGGGTATGCTGGGTTGAACCCGGTGTTGAAAAGTTACTTGAGGATTTGAGGGATGAAGACATATTTGTATACTTGGGCCATAATAGTGAGGAGTTCCATTCACAGTCTGTTCCTTATGGACGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

165

Amino Acids

18.71

Weight (kDa)

7.02

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	10, 438
AccII	CGCG	2 cut(s)	235, 298
AciI	CCGC	2 cut(s)	233, 246
AcuI	CTGAAG	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	270, 314, 386, 398
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	345
AoxI	GGCC	2 cut(s)	47, 445
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	1 cut(s)	390
AsuNHI	GCTAGC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	202, 309
BmtI	GCTAGC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	79, 428
BpuMI	CCSGG	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	378
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	2 cut(s)	235, 298
BshFI	GGCC	2 cut(s)	49, 447
BsiSI	CCGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	345
BsnI	GGCC	2 cut(s)	49, 447
Bsp143I	GATC	3 cut(s)	25, 62, 331
BspACI	CCGC	2 cut(s)	233, 246
BspANI	GGCC	2 cut(s)	49, 447
BspFNI	CGCG	2 cut(s)	235, 298
BspOI	GCTAGC	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	3 cut(s)	25, 62, 331
BssNAI	GTATAC	1 cut(s)	439
BssT1I	CCWWGG	1 cut(s)	220
Bst1107I	GTATAC	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	2 cut(s)	235, 298
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	3 cut(s)	28, 65, 334
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	25, 62, 331
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	2 cut(s)	235, 298
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BstZ17I	GTATAC	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	49, 447
BtsCI	GGATG	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	445
CviAII	CATG	2 cut(s)	167, 361
CviJI	RGCY	5 cut(s)	44, 49, 219, 266, 447
CviKI_1	RGCY	5 cut(s)	44, 49, 219, 266, 447
DpnI	GATC	3 cut(s)	27, 64, 333
DpnII	GATC	3 cut(s)	25, 62, 331
Eco130I	CCWWGG	1 cut(s)	220
Eco57I	CTGAAG	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	170, 364
FatI	CATG	2 cut(s)	166, 360
FauI	CCCGC	1 cut(s)	240
FblI	GTMKAC	2 cut(s)	10, 438
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	49, 447
HapII	CCGG	1 cut(s)	390
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	170, 364
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	390
Hpy166II	GTNNAC	3 cut(s)	11, 123, 439
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	23, 96, 314
Hpy8I	GTNNAC	3 cut(s)	11, 123, 439
HpyCH4III	ACNGT	1 cut(s)	474
HpyCH4V	TGCA	2 cut(s)	116, 277
Hsp92II	CATG	2 cut(s)	170, 364
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	25, 62, 331
LpnPI	CCDG	5 cut(s)	27, 36, 275, 364, 403
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	2 cut(s)	202, 309
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	83, 402
MalI	GATC	3 cut(s)	27, 64, 333
MboI	GATC	3 cut(s)	25, 62, 331
MboII	GAAGA	3 cut(s)	269, 326, 437
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	6 cut(s)	60, 186, 253, 403, 411, 451
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	1 cut(s)	390
MvnI	CGCG	2 cut(s)	235, 298
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	25, 62, 331
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	170, 364
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	25, 62, 331
Sau96I	GGNCC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	202, 309
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	58, 407
SmoI	CTYRAG	2 cut(s)	58, 407
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	233, 246
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	474
TaqI	TCGA	2 cut(s)	95, 103
TasI	AATT	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	349, 438
TspGWI	ACGGA	1 cut(s)	71
XmiI	GTMKAC	2 cut(s)	10, 438
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.