Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

35155293 .. 35159965

Gene Structure 4673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGTAGCACCAGGAAAAGCTCAAGCCAGGAGACAATCTGCAAACAGCAATGGTGAACGTGACAGTGGAAAAAGACCACGAGGTAGCAGCCAATCAGGGTATAGGAGGCACTCCAATAGCTCTGATGAGGTGACGGATTCTTCTGAAGAAAACAAAGAATCTAGAAGGAGACGCAATAAGCACCATGCGAGCCATAGATCTGGCGATCGCAAAAGTCATTACGGCTCAGTCGACACTAAGGGAAAGCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

10.91

Isoelectric Point (pI)

92.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	165
AjnI	CCWGG	2 cut(s)	10, 26
AluBI	AGCT	2 cut(s)	20, 120
AluI	AGCT	2 cut(s)	20, 120
Alw26I	GTCTC	2 cut(s)	25, 163
ApeKI	GCWGC	1 cut(s)	87
AsiSI	GCGATCGC	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	65, 142
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	12, 28
BcoDI	GTCTC	2 cut(s)	25, 163
BfaI	CTAG	1 cut(s)	162
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	12, 28
BmrFI	CCNGG	2 cut(s)	12, 28
BpuEI	CTTGAG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	12, 28
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	208
BsmAI	GTCTC	2 cut(s)	25, 163
BsmBI	CGTCTC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	197, 205
BspCNI	CTCAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	55
BssMI	GATC	2 cut(s)	197, 205
BssSI	CACGAG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	12, 28
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	226, 237
BstKTI	GATC	2 cut(s)	200, 208
BstMAI	GTCTC	2 cut(s)	25, 163
BstMBI	GATC	2 cut(s)	197, 205
BstMCI	CGRYCG	1 cut(s)	208
BstNI	CCWGG	2 cut(s)	12, 28
BstSCI	CCNGG	2 cut(s)	10, 26
BstV1I	GCAGC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	197
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	190
CseI	GACGC	1 cut(s)	180
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	7 cut(s)	20, 26, 90, 120, 192, 225, 247
CviKI_1	RGCY	7 cut(s)	20, 26, 90, 120, 192, 225, 247
DdeI	CTNAG	2 cut(s)	226, 237
DpnI	GATC	2 cut(s)	199, 207
DpnII	GATC	2 cut(s)	197, 205
Eco57I	CTGAAG	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	10, 26
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	102, 186, 195
FatI	CATG	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	88
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	137, 158
HphI	GGTGA	2 cut(s)	65, 142
Hpy166II	GTNNAC	2 cut(s)	56, 232
Hpy188I	TCNGA	2 cut(s)	124, 145
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	2 cut(s)	56, 232
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	226, 237
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	197, 205
LpnPI	CCDG	5 cut(s)	13, 24, 40, 81, 186
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	59, 130
MalI	GATC	2 cut(s)	199, 207
MboI	GATC	2 cut(s)	197, 205
MboII	GAAGA	2 cut(s)	132, 158
MflI	RGATCY	1 cut(s)	197
MnlI	CCTC	3 cut(s)	74, 99, 121
MseI	TTAA	1 cut(s)	253
MspR9I	CCNGG	2 cut(s)	12, 28
MvaI	CCWGG	2 cut(s)	12, 28
NdeII	GATC	2 cut(s)	197, 205
NlaIII	CATG	1 cut(s)	188
NmuCI	GTSAC	2 cut(s)	59, 130
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	137, 158
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	10, 26
PspGI	CCWGG	2 cut(s)	10, 26
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	208
RgaI	GCGATCGC	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	253
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	2 cut(s)	197, 205
ScrFI	CCNGG	2 cut(s)	12, 28
SetI	ASST	5 cut(s)	22, 61, 85, 122, 132
SfaAI	GCGATCGC	1 cut(s)	208
SgfI	GCGATCGC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	10, 26
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	137, 158
Tru1I	TTAA	1 cut(s)	253
Tru9I	TTAA	1 cut(s)	253
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	2 cut(s)	59, 130
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	2 cut(s)	59, 130
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.