zinc finger CCCH domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 293, 453, 830 |
| AclWI | GGATC | 2 cut(s) | 702, 750 |
| AcsI | RAATTY | 1 cut(s) | 654 |
| AcuI | CTGAAG | 2 cut(s) | 807, 1092 |
| AfaI | GTAC | 3 cut(s) | 466, 881, 1028 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 761 |
| AflIII | ACRYGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 3 cut(s) | 661, 869, 939 |
| AhlI | ACTAGT | 1 cut(s) | 932 |
| AjnI | CCWGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| AleI | CACNNNNGTG | 1 cut(s) | 722 |
| AluBI | AGCT | 5 cut(s) | 226, 332, 402, 432, 1047 |
| AluI | AGCT | 5 cut(s) | 226, 332, 402, 432, 1047 |
| Alw26I | GTCTC | 3 cut(s) | 99, 952, 1090 |
| AlwI | GGATC | 2 cut(s) | 702, 750 |
| AoxI | GGCC | 1 cut(s) | 380 |
| ApaI | GGGCCC | 1 cut(s) | 384 |
| ApeKI | GCWGC | 1 cut(s) | 1014 |
| ApoI | RAATTY | 1 cut(s) | 654 |
| AsiSI | GCGATCGC | 1 cut(s) | 1135 |
| AspLEI | GCGC | 1 cut(s) | 682 |
| AspS9I | GGNCC | 3 cut(s) | 316, 380, 381 |
| AsuHPI | GGTGA | 4 cut(s) | 386, 584, 992, 1069 |
| AsuNHI | GCTAGC | 1 cut(s) | 524 |
| AvaII | GGWCC | 1 cut(s) | 316 |
| BaeGI | GKGCMC | 1 cut(s) | 384 |
| BanII | GRGCYC | 2 cut(s) | 384, 583 |
| BbvCI | CCTCAGC | 1 cut(s) | 227 |
| BbvI | GCAGC | 1 cut(s) | 1026 |
| BccI | CCATC | 4 cut(s) | 154, 338, 371, 563 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 786, 820 |
| BciT130I | CCWGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| BcoDI | GTCTC | 3 cut(s) | 99, 952, 1090 |
| BcuI | ACTAGT | 1 cut(s) | 932 |
| BfaI | CTAG | 5 cut(s) | 237, 516, 525, 933, 1089 |
| BglII | AGATCT | 2 cut(s) | 592, 1124 |
| BisI | GCNGC | 1 cut(s) | 1015 |
| BlsI | GCNGC | 1 cut(s) | 1016 |
| Bme1390I | CCNGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| Bme18I | GGWCC | 1 cut(s) | 316 |
| BmgT120I | GGNCC | 3 cut(s) | 316, 380, 381 |
| BmiI | GGNNCC | 4 cut(s) | 382, 383, 673, 753 |
| BmrFI | CCNGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| BmsI | GCATC | 2 cut(s) | 175, 490 |
| BmtI | GCTAGC | 1 cut(s) | 528 |
| BoxI | GACNNNNGTC | 1 cut(s) | 516 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 316, 348 |
| BpmI | CTGGAG | 1 cut(s) | 942 |
| Bpu10I | CCTNAGC | 1 cut(s) | 227 |
| BsaBI | GATNNNNATC | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 2 cut(s) | 58, 582 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 761 |
| Bse3DI | GCAATG | 2 cut(s) | 424, 982 |
| Bse8I | GATNNNNATC | 1 cut(s) | 573 |
| BseBI | CCWGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| BseDI | CCNNGG | 2 cut(s) | 58, 582 |
| BseGI | GGATG | 1 cut(s) | 856 |
| BseJI | GATNNNNATC | 1 cut(s) | 573 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 761 |
| BseMI | GCAATG | 2 cut(s) | 424, 982 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseRI | GAGGAG | 1 cut(s) | 280 |
| BseSI | GKGCMC | 1 cut(s) | 384 |
| BseXI | GCAGC | 1 cut(s) | 1026 |
| BseYI | CCCAGC | 1 cut(s) | 747 |
| BsgI | GTGCAG | 1 cut(s) | 746 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1135 |
| BshFI | GGCC | 1 cut(s) | 382 |
| BsiEI | CGRYCG | 1 cut(s) | 1135 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 761 |
| BsmAI | GTCTC | 3 cut(s) | 99, 952, 1090 |
| BsmBI | CGTCTC | 1 cut(s) | 1090 |
| BsnI | GGCC | 1 cut(s) | 382 |
| Bsp120I | GGGCCC | 1 cut(s) | 380 |
| Bsp1286I | GDGCHC | 2 cut(s) | 384, 583 |
| Bsp143I | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| BspACI | CCGC | 3 cut(s) | 293, 453, 830 |
| BspANI | GGCC | 1 cut(s) | 382 |
| BspCNI | CTCAG | 1 cut(s) | 219 |
| BspHI | TCATGA | 1 cut(s) | 334 |
| BspLI | GGNNCC | 4 cut(s) | 382, 383, 673, 753 |
| BspOI | GCTAGC | 1 cut(s) | 528 |
| BspPI | GGATC | 2 cut(s) | 702, 750 |
| BsrDI | GCAATG | 2 cut(s) | 424, 982 |
| BssECI | CCNNGG | 2 cut(s) | 58, 582 |
| BssMI | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| Bst2UI | CCWGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| Bst4CI | ACNGT | 5 cut(s) | 11, 86, 320, 947, 992 |
| BstC8I | GCNNGC | 2 cut(s) | 526, 1117 |
| BstDEI | CTNAG | 1 cut(s) | 227 |
| BstDSI | CCRYGG | 1 cut(s) | 58 |
| BstF5I | GGATG | 1 cut(s) | 856 |
| BstHHI | GCGC | 1 cut(s) | 682 |
| BstKTI | GATC | 8 cut(s) | 536, 577, 595, 697, 745, 1004, 1127, 1135 |
| BstMAI | GTCTC | 3 cut(s) | 99, 952, 1090 |
| BstMBI | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| BstMCI | CGRYCG | 1 cut(s) | 1135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 299 |
| BstNI | CCWGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| BstNSI | RCATGY | 1 cut(s) | 54 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 516 |
| BstSCI | CCNGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| BstSLI | GKGCMC | 1 cut(s) | 384 |
| BstV1I | GCAGC | 1 cut(s) | 1026 |
| BstX2I | RGATCY | 2 cut(s) | 592, 1124 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 98, 1127 |
| BstYI | RGATCY | 2 cut(s) | 592, 1124 |
| BsuRI | GGCC | 1 cut(s) | 382 |
| BtgI | CCRYGG | 1 cut(s) | 58 |
| BtsCI | GGATG | 1 cut(s) | 856 |
| BtsIMutI | CAGTG | 4 cut(s) | 82, 717, 943, 997 |
| Cac8I | GCNNGC | 2 cut(s) | 526, 1117 |
| CciI | TCATGA | 1 cut(s) | 334 |
| CfoI | GCGC | 1 cut(s) | 682 |
| Cfr13I | GGNCC | 3 cut(s) | 316, 380, 381 |
| CseI | GACGC | 1 cut(s) | 1107 |
| CsiI | ACCWGGT | 1 cut(s) | 760 |
| Csp6I | GTAC | 3 cut(s) | 465, 880, 1027 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 82, 117 |
| CviAII | CATG | 5 cut(s) | 51, 335, 521, 815, 1112 |
| CviQI | GTAC | 3 cut(s) | 465, 880, 1027 |
| DdeI | CTNAG | 1 cut(s) | 227 |
| DpnI | GATC | 8 cut(s) | 535, 576, 594, 696, 744, 1003, 1126, 1134 |
| DpnII | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| DraI | TTTAAA | 1 cut(s) | 624 |
| EciI | GGCGGA | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 2 cut(s) | 384, 583 |
| Eco47I | GGWCC | 1 cut(s) | 316 |
| Eco57I | CTGAAG | 2 cut(s) | 807, 1092 |
| EcoO109I | RGGNCCY | 1 cut(s) | 381 |
| EcoRII | CCWGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| EcoT22I | ATGCAT | 1 cut(s) | 190 |
| EcoT38I | GRGCYC | 2 cut(s) | 384, 583 |
| Esp3I | CGTCTC | 1 cut(s) | 1090 |
| FaeI | CATG | 5 cut(s) | 54, 338, 524, 818, 1115 |
| FatI | CATG | 5 cut(s) | 50, 334, 520, 814, 1111 |
| FauI | CCCGC | 2 cut(s) | 286, 823 |
| Fnu4HI | GCNGC | 1 cut(s) | 1015 |
| FokI | GGATG | 1 cut(s) | 863 |
| FriOI | GRGCYC | 2 cut(s) | 384, 583 |
| Fsp4HI | GCNGC | 1 cut(s) | 1015 |
| FspBI | CTAG | 5 cut(s) | 237, 516, 525, 933, 1089 |
| GlaI | GCGC | 1 cut(s) | 681 |
| GluI | GCNGC | 1 cut(s) | 1015 |
| GsaI | CCCAGC | 1 cut(s) | 751 |
| GsuI | CTGGAG | 1 cut(s) | 942 |
| HaeIII | GGCC | 1 cut(s) | 382 |
| HgaI | GACGC | 1 cut(s) | 1107 |
| HhaI | GCGC | 1 cut(s) | 682 |
| Hin1II | CATG | 5 cut(s) | 54, 338, 524, 818, 1115 |
| Hin6I | GCGC | 1 cut(s) | 680 |
| HinP1I | GCGC | 1 cut(s) | 680 |
| HindIII | AAGCTT | 1 cut(s) | 400 |
| HphI | GGTGA | 4 cut(s) | 386, 584, 992, 1069 |
| Hpy166II | GTNNAC | 1 cut(s) | 983 |
| Hpy188I | TCNGA | 9 cut(s) | 184, 343, 358, 568, 597, 787, 808, 1051, 1072 |
| Hpy188III | TCNNGA | 6 cut(s) | 219, 276, 335, 698, 921, 1089 |
| Hpy8I | GTNNAC | 1 cut(s) | 983 |
| Hpy99I | CGWCG | 1 cut(s) | 828 |
| HpyAV | CCTTC | 4 cut(s) | 202, 782, 840, 1086 |
| HpyCH4III | ACNGT | 5 cut(s) | 11, 86, 320, 947, 992 |
| HpyCH4IV | ACGT | 2 cut(s) | 985, 1141 |
| HpyCH4V | TGCA | 9 cut(s) | 46, 167, 188, 302, 409, 503, 687, 727, 968 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 299 |
| HpyF3I | CTNAG | 1 cut(s) | 227 |
| HpySE526I | ACGT | 2 cut(s) | 985, 1141 |
| Hsp92II | CATG | 5 cut(s) | 54, 338, 524, 818, 1115 |
| HspAI | GCGC | 1 cut(s) | 680 |
| Kzo9I | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| Lsp1109I | GCAGC | 1 cut(s) | 1026 |
| LweI | GCATC | 2 cut(s) | 175, 490 |
| MabI | ACCWGGT | 1 cut(s) | 760 |
| MaeI | CTAG | 5 cut(s) | 237, 516, 525, 933, 1089 |
| MaeII | ACGT | 2 cut(s) | 985, 1141 |
| MaeIII | GTNAC | 4 cut(s) | 35, 928, 986, 1057 |
| MalI | GATC | 8 cut(s) | 535, 576, 594, 696, 744, 1003, 1126, 1134 |
| MboI | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| MboII | GAAGA | 3 cut(s) | 494, 1059, 1085 |
| MflI | RGATCY | 2 cut(s) | 592, 1124 |
| MhlI | GDGCHC | 2 cut(s) | 384, 583 |
| MluCI | AATT | 5 cut(s) | 73, 654, 781, 875, 1156 |
| MlyI | GAGTC | 1 cut(s) | 506 |
| MmeI | TCCRAC | 1 cut(s) | 471 |
| MnlI | CCTC | 5 cut(s) | 222, 258, 279, 1026, 1048 |
| Mph1103I | ATGCAT | 1 cut(s) | 190 |
| MseI | TTAA | 3 cut(s) | 434, 623, 651 |
| MslI | CAYNNNNRTG | 1 cut(s) | 722 |
| MspA1I | CMGCKG | 1 cut(s) | 226 |
| MspR9I | CCNGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| MvaI | CCWGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 299 |
| NdeII | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| NheI | GCTAGC | 1 cut(s) | 524 |
| NlaIII | CATG | 5 cut(s) | 54, 338, 524, 818, 1115 |
| NlaIV | GGNNCC | 4 cut(s) | 382, 383, 673, 753 |
| NmuCI | GTSAC | 2 cut(s) | 986, 1057 |
| NsiI | ATGCAT | 1 cut(s) | 190 |
| NspI | RCATGY | 1 cut(s) | 54 |
| OliI | CACNNNNGTG | 1 cut(s) | 722 |
| PagI | TCATGA | 1 cut(s) | 334 |
| PciI | ACATGT | 1 cut(s) | 50 |
| PfeI | GAWTC | 9 cut(s) | 257, 338, 641, 818, 854, 869, 917, 1064, 1085 |
| PfoI | TCCNGGA | 1 cut(s) | 953 |
| PkrI | GCNGC | 1 cut(s) | 1016 |
| Ple19I | CGATCG | 1 cut(s) | 1135 |
| PleI | GAGTC | 1 cut(s) | 506 |
| PpsI | GAGTC | 1 cut(s) | 506 |
| PscI | ACATGT | 1 cut(s) | 50 |
| PshAI | GACNNNNGTC | 1 cut(s) | 516 |
| Psp6I | CCWGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| PspFI | CCCAGC | 1 cut(s) | 747 |
| PspGI | CCWGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| PspN4I | GGNNCC | 4 cut(s) | 382, 383, 673, 753 |
| PspOMI | GGGCCC | 1 cut(s) | 380 |
| PspPI | GGNCC | 3 cut(s) | 316, 380, 381 |
| PsuI | RGATCY | 2 cut(s) | 592, 1124 |
| PvuI | CGATCG | 1 cut(s) | 1135 |
| PvuII | CAGCTG | 1 cut(s) | 226 |
| RgaI | GCGATCGC | 1 cut(s) | 1135 |
| RsaI | GTAC | 3 cut(s) | 466, 881, 1028 |
| RsaNI | GTAC | 3 cut(s) | 465, 880, 1027 |
| RseI | CAYNNNNRTG | 1 cut(s) | 722 |
| SaqAI | TTAA | 3 cut(s) | 434, 623, 651 |
| SatI | GCNGC | 1 cut(s) | 1015 |
| Sau3AI | GATC | 8 cut(s) | 533, 574, 592, 694, 742, 1001, 1124, 1132 |
| Sau96I | GGNCC | 3 cut(s) | 316, 380, 381 |
| SchI | GAGTC | 1 cut(s) | 506 |
| ScrFI | CCNGG | 5 cut(s) | 99, 457, 584, 762, 955 |
| SduI | GDGCHC | 2 cut(s) | 384, 583 |
| SexAI | ACCWGGT | 1 cut(s) | 760 |
| SfaAI | GCGATCGC | 1 cut(s) | 1135 |
| SfaNI | GCATC | 2 cut(s) | 175, 490 |
| SgfI | GCGATCGC | 1 cut(s) | 1135 |
| SinI | GGWCC | 1 cut(s) | 316 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 722 |
| SpeI | ACTAGT | 1 cut(s) | 932 |
| Sse9I | AATT | 5 cut(s) | 73, 654, 781, 875, 1156 |
| SsiI | CCGC | 3 cut(s) | 293, 453, 830 |
| SspI | AATATT | 1 cut(s) | 146 |
| SspMI | CTAG | 5 cut(s) | 237, 516, 525, 933, 1089 |
| StyD4I | CCNGG | 5 cut(s) | 97, 455, 582, 760, 953 |
| TaaI | ACNGT | 5 cut(s) | 11, 86, 320, 947, 992 |
| TaiI | ACGT | 2 cut(s) | 988, 1144 |
| TaqI | TCGA | 1 cut(s) | 577 |
| TasI | AATT | 5 cut(s) | 73, 654, 781, 875, 1156 |
| TatI | WGTACW | 2 cut(s) | 464, 879 |
| TfiI | GAWTC | 9 cut(s) | 257, 338, 641, 818, 854, 869, 917, 1064, 1085 |
| Tru1I | TTAA | 3 cut(s) | 434, 623, 651 |
| Tru9I | TTAA | 3 cut(s) | 434, 623, 651 |
| TscAI | CASTG | 4 cut(s) | 89, 724, 950, 997 |
| TseFI | GTSAC | 2 cut(s) | 986, 1057 |
| TseI | GCWGC | 1 cut(s) | 1014 |
| Tsp45I | GTSAC | 2 cut(s) | 986, 1057 |
| TspDTI | ATGAA | 5 cut(s) | 126, 221, 831, 867, 930 |
| TspGWI | ACGGA | 2 cut(s) | 269, 1076 |
| TspRI | CASTG | 4 cut(s) | 89, 724, 950, 997 |
| VpaK11BI | GGWCC | 1 cut(s) | 316 |
| XapI | RAATTY | 1 cut(s) | 654 |
| XbaI | TCTAGA | 1 cut(s) | 1088 |
| XceI | RCATGY | 1 cut(s) | 54 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 98 |
| XspI | CTAG | 5 cut(s) | 237, 516, 525, 933, 1089 |
| Zsp2I | ATGCAT | 1 cut(s) | 190 |