Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

26507616 .. 26514018

Gene Structure 6403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

ATGGGAGAGTTAGAAACCCCAGCAGACAAAGAAGGAGATGGAGGTGTTCAGCCTAAAACGGAGGCGGGGATGAGCCGGAAGGAGAAGAGGAAAACCATGAAGAAGATGAAGCGGAAGCAGACGAGGAAGGAAATCGCTCTCAAACAGCATGAAGAAGAAGAGGCGAGGCTCCAAGATCCTCAAGAGCTTATCAACATGGAGCAAGAGGAGGCCAAGAGGTCCGAGAGTGTGAGGATCATATTCGAGGAGCGAGAGAGAGCTTGGATTGAAGCCATGGAGATTCGAAAGAAAAAACGAATCGAAGAAGAAGAGGAACGTAGAATTAGCGCTCTGGAATACGAGGAACTATCCCGCAAGCAACAGATCAAAAATGCAAATGATGATGGTGATGATGACTGGGAGTATGTAGAAGAGGGACCTGCTGAAATCATCTGGCAGGGAAATGAAATAACTGTCAAGAAGAAAAGAGTCAAGGTTCCAAAGAGGAATAAAGACCAGCGAAGTATAAAGGAGGATTCTGATCGACCTACATCAAATCCTCTCCCTCCACAATCTGAAGCTTTTGATGATTACAAAAATGCATCTTTATCAGCGCAGCAGCTGATAGAGACTGTGGCTGAACAAGTACCGCATTTTGGAACTGAACAGGATAAAGATCATTGTCCTTTCCATTTGAAAACTGGAGCTTGTCGGTTTGGTCAGCATTGCAGCCGGGTGCATTTCTACCCGGATAAATCATCCACACTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTCGAGTACACTGACGAAGAAATTGAGCGCTGTTATGAAGAATTTTATGAGGATGTTCATACAGAGTTCTTGAAGTTCGGAGAAATTATAAATTTCAAGGTGTGCATAAATGGTGCACCCCACTTGCGGGGAAATGTGTACGTACAGTTCAGTGCACCGGAGTCGGCTTTGGTTGCGCATCAATCTGTCAATGGTCGCTACTTTGCTGGGAAGCAGATAAGTTGTGACTTCATCAATGTGACCAGATGGAAGGTTGCCATATGTGGGGAATATGTGAAGTCGAGGTACAAGACATGTTCCCGTGGTAGGACATGCAATTTTATCCACTGTTTCCGCAATCCTGGTGGAGAGTATGAATGGGCTGATAGTGATAGGCCACCCCCAAAATATTGGGTGGAAAAGATGGTTGCATTATTTGGTTATTCTGATGCATACAAGAAACATATGATGGAGGATAACTCTGGACAGCTGAGGAACTCTAGCAAGAAGTCAATGACAGATTCACAGAGGTATGTTGTTCAAAGATCTAGTTCTAGAGATGGGAGTTACTCAAGTTTTGCTGGTTCTAGTAGAAGATACGACAATGAAAATTATGCTCCGAAGGGCACCGGCCACCATAGACCTTCAGGTGAAGAGAACGCTTACTTGAAGGACTTTAATCACAGGAAGAACAGAAAATATGTTACAAGTGATGATGTTGTGCAGTTGAGGGGTAAGGTTGCTTGTGAAATCAGTAGTGCAGATGAGTTGACCCTCACAGAGCTTATGTTCAATGGCGTTTTCAAGGACAGAAAGGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCAGATATTATGGAGGCTACATATGCTTGGGCAAAAGGGTCAGAATTTTACGAGATAATGTCAGTTACAGGGGTTTTTGAGGGTAGCTTAATCAGAGGGCAATTAGGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

582

Amino Acids

67.36

Weight (kDa)

5.86

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSHCT	PF08148	498 - 533	3.5e-08	DSHCT (NUC185) domain
DSHCT	PF08148	539 - 577	7.8e-08	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
Acc16I	TGCGCA	1 cut(s)	978
Acc36I	ACCTGC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	1406
AciI	CCGC	6 cut(s)	65, 112, 352, 629, 928, 1135
AclWI	GGATC	2 cut(s)	170, 242
AcoI	YGGCCR	2 cut(s)	1411, 1634
AcsI	RAATTY	3 cut(s)	842, 892, 1679
AcuI	CTGAAG	2 cut(s)	576, 1410
AfaI	GTAC	6 cut(s)	627, 764, 809, 941, 945, 1088
AfeI	AGCGCT	2 cut(s)	328, 830
AfiI	CCNNNNNNNGG	6 cut(s)	635, 784, 927, 928, 1065, 1107
AflIII	ACRYGT	2 cut(s)	759, 1094
AgsI	TTSAA	9 cut(s)	269, 676, 874, 898, 1322, 1450, 1573, 1585, 1601
AjnI	CCWGG	2 cut(s)	772, 1141
AluBI	AGCT	9 cut(s)	187, 260, 560, 601, 686, 1270, 1564, 1617, 1722
AluI	AGCT	9 cut(s)	187, 260, 560, 601, 686, 1270, 1564, 1617, 1722
Alw21I	GWGCWC	2 cut(s)	919, 958
Alw26I	GTCTC	1 cut(s)	602
Alw44I	GTGCAC	2 cut(s)	915, 954
AlwI	GGATC	2 cut(s)	170, 242
AlwNI	CAGNNNCTG	1 cut(s)	601
Ama87I	CYCGRG	1 cut(s)	803
Aor51HI	AGCGCT	2 cut(s)	328, 830
AoxI	GGCC	5 cut(s)	210, 775, 1175, 1411, 1634
ApaLI	GTGCAC	2 cut(s)	915, 954
ApeKI	GCWGC	3 cut(s)	595, 598, 708
ApoI	RAATTY	3 cut(s)	842, 892, 1679
AspLEI	GCGC	4 cut(s)	329, 595, 831, 979
AspS9I	GGNCC	3 cut(s)	219, 416, 770
AsuC2I	CCSGG	2 cut(s)	713, 728
AsuHPI	GGTGA	2 cut(s)	398, 1442
AsuII	TTCGAA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	803
AvaII	GGWCC	3 cut(s)	219, 416, 770
BaeGI	GKGCMC	3 cut(s)	919, 958, 1409
BanI	GGYRCC	1 cut(s)	1406
BanII	GRGCYC	1 cut(s)	804
BarI	GAAGNNNNNNTAC	2 cut(s)	1070, 1102
Bbv12I	GWGCWC	2 cut(s)	919, 958
BbvCI	CCTCAGC	1 cut(s)	1271
BbvI	GCAGC	3 cut(s)	607, 610, 720
BccI	CCATC	6 cut(s)	32, 377, 1041, 1198, 1243, 1334
BcgI	CGANNNNNNTGC	2 cut(s)	945, 979
BciT130I	CCWGG	2 cut(s)	774, 1143
BcnI	CCSGG	2 cut(s)	713, 728
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	4 cut(s)	1281, 1329, 1335, 1368
BfoI	RGCGCY	2 cut(s)	330, 832
BfuAI	ACCTGC	1 cut(s)	427
BglII	AGATCT	1 cut(s)	1325
BisI	GCNGC	3 cut(s)	596, 599, 709
BlsI	GCNGC	3 cut(s)	597, 600, 710
Bme1390I	CCNGG	4 cut(s)	713, 728, 774, 1143
Bme18I	GGWCC	3 cut(s)	219, 416, 770
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	3 cut(s)	219, 416, 770
BmiI	GGNNCC	4 cut(s)	170, 417, 477, 1408
BmrFI	CCNGG	4 cut(s)	713, 728, 774, 1143
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	3 cut(s)	590, 988, 1219
BmuI	ACTGGG	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	1244, 1276
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	1271
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	165, 1336
BpuMI	CCSGG	2 cut(s)	713, 728
Bsa29I	ATCGAT	1 cut(s)	1611
BsaAI	YACGTR	1 cut(s)	943
BsaBI	GATNNNNATC	2 cut(s)	519, 654
BsaJI	CCNNGG	2 cut(s)	273, 1102
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	6 cut(s)	635, 784, 927, 928, 1065, 1107
Bse118I	RCCGGY	1 cut(s)	1409
Bse1I	ACTGG	2 cut(s)	401, 685
Bse3DI	GCAATG	1 cut(s)	703
Bse8I	GATNNNNATC	2 cut(s)	519, 654
BseBI	CCWGG	2 cut(s)	774, 1143
BseCI	ATCGAT	1 cut(s)	1611
BseDI	CCNNGG	2 cut(s)	273, 1102
BseGI	GGATG	4 cut(s)	75, 737, 799, 859
BseJI	GATNNNNATC	2 cut(s)	519, 654
BseLI	CCNNNNNNNGG	6 cut(s)	635, 784, 927, 928, 1065, 1107
BseMI	GCAATG	1 cut(s)	703
BseMII	CTCAG	1 cut(s)	1262
BseNI	ACTGG	2 cut(s)	401, 685
BseRI	GAGGAG	2 cut(s)	221, 260
BseSI	GKGCMC	3 cut(s)	919, 958, 1409
BseXI	GCAGC	3 cut(s)	607, 610, 720
BseYI	CCCAGC	2 cut(s)	19, 1007
BsgI	GTGCAG	2 cut(s)	1523, 1560
BshFI	GGCC	5 cut(s)	212, 777, 1177, 1413, 1636
BshNI	GGYRCC	1 cut(s)	1406
BshVI	ATCGAT	1 cut(s)	1611
BsiHKAI	GWGCWC	2 cut(s)	919, 958
BsiHKCI	CYCGRG	1 cut(s)	803
BsiSI	CCGG	5 cut(s)	76, 712, 728, 959, 1410
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	6 cut(s)	635, 784, 927, 928, 1065, 1107
BsmAI	GTCTC	1 cut(s)	602
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	5 cut(s)	212, 777, 1177, 1413, 1636
BsoBI	CYCGRG	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	4 cut(s)	804, 919, 958, 1409
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	6 cut(s)	65, 112, 352, 629, 928, 1135
BspANI	GGCC	5 cut(s)	212, 777, 1177, 1413, 1636
BspCNI	CTCAG	1 cut(s)	1263
BspDI	ATCGAT	1 cut(s)	1611
BspLI	GGNNCC	4 cut(s)	170, 417, 477, 1408
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	2 cut(s)	170, 242
BspT104I	TTCGAA	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	1406
BsrDI	GCAATG	1 cut(s)	703
BsrFI	RCCGGY	1 cut(s)	1409
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	401, 685
BssAI	RCCGGY	1 cut(s)	1409
BssECI	CCNNGG	2 cut(s)	273, 1102
BssMI	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	774, 1143
Bst4CI	ACNGT	4 cut(s)	454, 613, 948, 1130
Bst6I	CTCTTC	5 cut(s)	80, 153, 303, 405, 1428
BstAUI	TGTACA	1 cut(s)	762
BstBAI	YACGTR	1 cut(s)	943
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	1 cut(s)	1271
BstDSI	CCRYGG	2 cut(s)	273, 1102
BstF5I	GGATG	4 cut(s)	75, 737, 799, 859
BstH2I	RGCGCY	2 cut(s)	330, 832
BstHHI	GCGC	4 cut(s)	329, 595, 831, 979
BstKTI	GATC	6 cut(s)	178, 237, 366, 523, 658, 1328
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
BstMWI	GCNNNNNNNGC	2 cut(s)	974, 1658
BstNI	CCWGG	2 cut(s)	774, 1143
BstNSI	RCATGY	3 cut(s)	763, 1098, 1116
BstSCI	CCNGG	4 cut(s)	711, 726, 772, 1141
BstSLI	GKGCMC	3 cut(s)	919, 958, 1409
BstSNI	TACGTA	1 cut(s)	943
BstV1I	GCAGC	3 cut(s)	607, 610, 720
BstX2I	RGATCY	2 cut(s)	175, 1325
BstXI	CCANNNNNNTGG	1 cut(s)	1191
BstYI	RGATCY	2 cut(s)	175, 1325
Bsu15I	ATCGAT	1 cut(s)	1611
BsuRI	GGCC	5 cut(s)	212, 777, 1177, 1413, 1636
BsuTUI	ATCGAT	1 cut(s)	1611
BtgI	CCRYGG	2 cut(s)	273, 1102
BtsCI	GGATG	4 cut(s)	75, 737, 799, 859
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	4 cut(s)	743, 810, 958, 1126
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	601
CfoI	GCGC	4 cut(s)	329, 595, 831, 979
Cfr10I	RCCGGY	1 cut(s)	1409
Cfr13I	GGNCC	3 cut(s)	219, 416, 770
ClaI	ATCGAT	1 cut(s)	1611
Csp6I	GTAC	6 cut(s)	626, 763, 808, 940, 944, 1087
CspCI	CAANNNNNGTGG	2 cut(s)	1126, 1161
CviAII	CATG	7 cut(s)	97, 149, 196, 274, 760, 1095, 1113
CviQI	GTAC	6 cut(s)	626, 763, 808, 940, 944, 1087
DdeI	CTNAG	1 cut(s)	1271
DpnI	GATC	6 cut(s)	177, 236, 365, 522, 657, 1327
DpnII	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
EaeI	YGGCCR	2 cut(s)	1411, 1634
Eam1104I	CTCTTC	5 cut(s)	80, 153, 303, 405, 1428
EarI	CTCTTC	5 cut(s)	80, 153, 303, 405, 1428
Eco105I	TACGTA	1 cut(s)	943
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	804
Eco47I	GGWCC	3 cut(s)	219, 416, 770
Eco47III	AGCGCT	2 cut(s)	328, 830
Eco57I	CTGAAG	2 cut(s)	576, 1410
Eco88I	CYCGRG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	772, 1141
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	2 cut(s)	583, 1234
EcoT38I	GRGCYC	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	7 cut(s)	100, 152, 199, 277, 763, 1098, 1116
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	7 cut(s)	96, 148, 195, 273, 759, 1094, 1112
FauI	CCCGC	3 cut(s)	58, 359, 921
FauNDI	CATATG	3 cut(s)	1061, 1245, 1657
Fnu4HI	GCNGC	3 cut(s)	596, 599, 709
FokI	GGATG	4 cut(s)	82, 724, 806, 866
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	3 cut(s)	596, 599, 709
FspBI	CTAG	4 cut(s)	1281, 1329, 1335, 1368
FspI	TGCGCA	1 cut(s)	978
GlaI	GCGC	4 cut(s)	328, 594, 830, 978
GluI	GCNGC	3 cut(s)	596, 599, 709
GsaI	CCCAGC	2 cut(s)	23, 1011
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	2 cut(s)	330, 832
HaeIII	GGCC	5 cut(s)	212, 777, 1177, 1413, 1636
HapII	CCGG	5 cut(s)	76, 712, 728, 959, 1410
HhaI	GCGC	4 cut(s)	329, 595, 831, 979
Hin1II	CATG	7 cut(s)	100, 152, 199, 277, 763, 1098, 1116
Hin6I	GCGC	4 cut(s)	327, 593, 829, 977
HinP1I	GCGC	4 cut(s)	327, 593, 829, 977
HincII	GTYRAC	1 cut(s)	1551
HindII	GTYRAC	1 cut(s)	1551
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	6 cut(s)	280, 297, 468, 515, 962, 1301
HpaII	CCGG	5 cut(s)	76, 712, 728, 959, 1410
HphI	GGTGA	2 cut(s)	398, 1442
Hpy166II	GTNNAC	5 cut(s)	810, 917, 940, 956, 1551
Hpy188I	TCNGA	8 cut(s)	223, 520, 556, 881, 1228, 1401, 1678, 1730
Hpy188III	TCNNGA	7 cut(s)	182, 332, 457, 754, 871, 1263, 1335
Hpy8I	GTNNAC	5 cut(s)	810, 917, 940, 956, 1551
HpyAV	CCTTC	7 cut(s)	26, 73, 121, 1045, 1396, 1434, 1444
HpyCH4III	ACNGT	4 cut(s)	454, 613, 948, 1130
HpyCH4IV	ACGT	2 cut(s)	316, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	974, 1658
HpyF3I	CTNAG	1 cut(s)	1271
HpySE526I	ACGT	2 cut(s)	316, 942
Hsp92II	CATG	7 cut(s)	100, 152, 199, 277, 763, 1098, 1116
HspAI	GCGC	4 cut(s)	327, 593, 829, 977
Kzo9I	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
LmnI	GCTCC	6 cut(s)	174, 199, 247, 683, 787, 1402
Lsp1109I	GCAGC	3 cut(s)	607, 610, 720
LweI	GCATC	3 cut(s)	590, 988, 1219
MaeI	CTAG	4 cut(s)	1281, 1329, 1335, 1368
MaeII	ACGT	2 cut(s)	316, 942
MaeIII	GTNAC	5 cut(s)	1025, 1039, 1346, 1483, 1699
MalI	GATC	6 cut(s)	177, 236, 365, 522, 657, 1327
MboI	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
MflI	RGATCY	2 cut(s)	175, 1325
MhlI	GDGCHC	4 cut(s)	804, 919, 958, 1409
MlyI	GAGTC	2 cut(s)	477, 971
Mph1103I	ATGCAT	2 cut(s)	583, 1234
MseI	TTAA	2 cut(s)	1458, 1724
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	2 cut(s)	601, 1270
MspI	CCGG	5 cut(s)	76, 712, 728, 959, 1410
MspR9I	CCNGG	4 cut(s)	713, 728, 774, 1143
MvaI	CCWGG	2 cut(s)	774, 1143
MwoI	GCNNNNNNNGC	2 cut(s)	974, 1658
NciI	CCSGG	2 cut(s)	713, 728
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	3 cut(s)	1061, 1245, 1657
NdeII	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
NlaIII	CATG	7 cut(s)	100, 152, 199, 277, 763, 1098, 1116
NlaIV	GGNNCC	4 cut(s)	170, 417, 477, 1408
NmuCI	GTSAC	2 cut(s)	1025, 1039
NsbI	TGCGCA	1 cut(s)	978
NsiI	ATGCAT	2 cut(s)	583, 1234
NspI	RCATGY	3 cut(s)	763, 1098, 1116
NspV	TTCGAA	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	803
PciI	ACATGT	2 cut(s)	759, 1094
PfeI	GAWTC	4 cut(s)	280, 297, 515, 1301
PkrI	GCNGC	3 cut(s)	597, 600, 710
PleI	GAGTC	2 cut(s)	476, 970
PpsI	GAGTC	2 cut(s)	476, 970
Ppu21I	YACGTR	1 cut(s)	943
PpuMI	RGGWCCY	1 cut(s)	416
PscI	ACATGT	2 cut(s)	759, 1094
PsiI	TTATAA	1 cut(s)	890
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	772, 1141
PspFI	CCCAGC	2 cut(s)	19, 1007
PspGI	CCWGG	2 cut(s)	772, 1141
PspN4I	GGNNCC	4 cut(s)	170, 417, 477, 1408
PspPI	GGNCC	3 cut(s)	219, 416, 770
PspPPI	RGGWCCY	1 cut(s)	416
PspXI	VCTCGAGB	1 cut(s)	803
PsrI	GAACNNNNNNTAC	2 cut(s)	932, 964
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	175, 1325
PvuII	CAGCTG	2 cut(s)	601, 1270
RsaI	GTAC	6 cut(s)	627, 764, 809, 941, 945, 1088
RsaNI	GTAC	6 cut(s)	626, 763, 808, 940, 944, 1087
RseI	CAYNNNNRTG	1 cut(s)	1037
SaqAI	TTAA	2 cut(s)	1458, 1724
SatI	GCNGC	3 cut(s)	596, 599, 709
Sau3AI	GATC	6 cut(s)	175, 234, 363, 520, 655, 1325
Sau96I	GGNCC	3 cut(s)	219, 416, 770
SchI	GAGTC	2 cut(s)	477, 971
ScrFI	CCNGG	4 cut(s)	713, 728, 774, 1143
SduI	GDGCHC	4 cut(s)	804, 919, 958, 1409
SfaNI	GCATC	3 cut(s)	590, 988, 1219
Sfr274I	CTCGAG	1 cut(s)	803
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	3 cut(s)	219, 416, 770
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	3 cut(s)	180, 803, 1351
SmoI	CTYRAG	3 cut(s)	180, 803, 1351
SnaBI	TACGTA	1 cut(s)	943
SsiI	CCGC	6 cut(s)	65, 112, 352, 629, 928, 1135
SspI	AATATT	1 cut(s)	1190
SspMI	CTAG	4 cut(s)	1281, 1329, 1335, 1368
StyD4I	CCNGG	4 cut(s)	711, 726, 772, 1141
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	4 cut(s)	454, 613, 948, 1130
TaiI	ACGT	2 cut(s)	319, 945
TaqI	TCGA	7 cut(s)	243, 283, 300, 523, 804, 1082, 1611
TatI	WGTACW	2 cut(s)	762, 807
TfiI	GAWTC	4 cut(s)	280, 297, 515, 1301
Tru1I	TTAA	2 cut(s)	1458, 1724
Tru9I	TTAA	2 cut(s)	1458, 1724
TscAI	CASTG	4 cut(s)	750, 817, 958, 1133
TseFI	GTSAC	2 cut(s)	1025, 1039
TseI	GCWGC	3 cut(s)	595, 598, 708
Tsp45I	GTSAC	2 cut(s)	1025, 1039
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	4 cut(s)	750, 817, 958, 1133
VneI	GTGCAC	2 cut(s)	915, 954
VpaK11BI	GGWCC	3 cut(s)	219, 416, 770
XapI	RAATTY	3 cut(s)	842, 892, 1679
XbaI	TCTAGA	1 cut(s)	1334
XceI	RCATGY	3 cut(s)	763, 1098, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	803
XspI	CTAG	4 cut(s)	1281, 1329, 1335, 1368
Zsp2I	ATGCAT	2 cut(s)	583, 1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.