Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

42423586 .. 42425327

Gene Structure 1742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTCAATGGCGTTTTCACCATCTCTTCTCTTATGTTTTGTTTGGTGGGAAAAACTAAAAGATGCTACAAAACCAAGGAAGAAATTGACCTGCTCTTCTTGCAATTACAAGAAACTGCTCGGAGGGTGGCTGAAGTTCAGCTTCAGTTTTTTTCTGGTGAAGTTGAAATTGACATCGATAGCTTTGTGAGTTCATTTCGGCCTGATATTATGGAGGCTACATATGCTTGGGCAGAAGGGTCAAAATTTTACGAGATAATGTCAGATTTTGAGGGTAGCTTAATCAGGGCAATTAGGAGATTAGAGGAAGTTCTTCAGCAACTTATACATGCAGCCAATTCTATTGGAGAAATTGATCTTTTGAGGAGGCTGTTTCAAAAATTAAGAGAGACATTGTCTTTGCAGCTTCCCTATACTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000460 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019439 GO:0022613 GO:0031123 GO:0031125 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043628 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

140

Amino Acids

16.36

Weight (kDa)

5.09

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSHCT	PF08148	9 - 122	1.2e-19	DSHCT (NUC185) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	3 cut(s)	128, 153, 299
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	7, 167, 377
AluBI	AGCT	4 cut(s)	142, 183, 279, 406
AluI	AGCT	4 cut(s)	142, 183, 279, 406
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	332, 403
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	10, 170
BbvI	GCAGC	2 cut(s)	344, 415
BccI	CCATC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	333, 404
BlsI	GCNGC	2 cut(s)	334, 405
BmsI	GCATC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	344, 415
BshFI	GGCC	1 cut(s)	202
BshVI	ATCGAT	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	355
BspANI	GGCC	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	31, 101
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 224
BstNSI	RCATGY	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	344, 415
Bsu15I	ATCGAT	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	99
ClaI	ATCGAT	1 cut(s)	177
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	9 cut(s)	131, 142, 183, 202, 218, 279, 335, 370, 406
CviKI_1	RGCY	9 cut(s)	131, 142, 183, 202, 218, 279, 335, 370, 406
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	31, 101
EarI	CTCTTC	2 cut(s)	31, 101
Eco130I	CCWWGG	1 cut(s)	75
Eco57I	CTGAAG	3 cut(s)	128, 153, 299
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	332
FaiI	YATR	7 cut(s)	35, 212, 223, 225, 326, 330, 414
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	1 cut(s)	328
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	333, 404
Fsp4HI	GCNGC	2 cut(s)	333, 404
GluI	GCNGC	2 cut(s)	333, 404
HaeIII	GGCC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	10, 170
Hpy188I	TCNGA	2 cut(s)	123, 265
HpyAV	CCTTC	1 cut(s)	230
HpyCH4V	TGCA	3 cut(s)	103, 332, 403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 224
Hsp92II	CATG	1 cut(s)	332
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	101
LpnPI	CCDG	4 cut(s)	104, 141, 216, 271
Lsp1109I	GCAGC	2 cut(s)	344, 415
LweI	GCATC	1 cut(s)	53
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	4 cut(s)	18, 88, 92, 305
MluCI	AATT	8 cut(s)	84, 104, 168, 245, 291, 337, 351, 380
MnlI	CCTC	6 cut(s)	117, 208, 265, 298, 357, 360
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	281, 383
MwoI	GCNNNNNNNGC	2 cut(s)	100, 224
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	332
NspI	RCATGY	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	2 cut(s)	334, 405
PsyI	GACNNNGTC	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	281, 383
SatI	GCNGC	2 cut(s)	333, 404
Sau3AI	GATC	1 cut(s)	355
SetI	ASST	5 cut(s)	93, 144, 185, 281, 408
SfaNI	GCATC	1 cut(s)	53
Sse9I	AATT	8 cut(s)	84, 104, 168, 245, 291, 337, 351, 380
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	177
TasI	AATT	8 cut(s)	84, 104, 168, 245, 291, 337, 351, 380
Tru1I	TTAA	2 cut(s)	281, 383
Tru9I	TTAA	2 cut(s)	281, 383
TseI	GCWGC	2 cut(s)	332, 403
TspDTI	ATGAA	1 cut(s)	183
Tth111I	GACNNNGTC	1 cut(s)	394
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.