Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

85782650 .. 85784562

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG541200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCGCTTGCTTTTAGCGACATCAGAAACAAGCACAAGATTTGAAGAGCACAAGACAGCTGATGCAGGGCAAAAGTATCACTTTACATTTGACAAAGTATTTGATCATGTGGCATCACTACATGATGTTTTTGTGGAAATATCGCAACTTTTCCAAAGTGCACTTGACGGCTACAAGGTGGATCTTTTTTCTGCATTTTATTTTGTGCAGCTGATTGAGACTGAACAAGTACTGCATTTTGGAACTGAACAGGATGAAGATCATTGTCCTTTCCATTTGAAAACTGGCCGGAGCTTGTCGGTTTGGTCGACATTGCAGCAGAGTCCTTTCTACCCAGATAAATCATCCACACTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTTGAGGTGACGCAGGGCATTACATATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

146

Amino Acids

16.81

Weight (kDa)

4.86

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	10 - 63	8.9e-06	Kinesin motor domain
Microtub_bd	PF16796	15 - 64	2e-09	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	286
AfaI	GTAC	2 cut(s)	231, 371
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	44, 280
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	59, 211, 294
AluI	AGCT	3 cut(s)	59, 211, 294
Alw21I	GWGCWC	2 cut(s)	51, 163
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	286, 382
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	208, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	51, 163
BbvI	GCAGC	2 cut(s)	220, 328
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	2 cut(s)	209, 317
BlsI	GCNGC	2 cut(s)	210, 318
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	52, 122
BpuEI	CTTGAG	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	259, 344, 406
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	220, 328
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	288, 384
BsiHKAI	GWGCWC	2 cut(s)	51, 163
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	288, 384
Bsp1286I	GDGCHC	2 cut(s)	51, 163
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	103, 181, 259
BspANI	GGCC	2 cut(s)	288, 384
BspPI	GGATC	1 cut(s)	189
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	103, 181, 259
Bst2UI	CCWGG	1 cut(s)	381
Bst6I	CTCTTC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	259, 344, 406
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	106, 184, 262
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	103, 181, 259
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	220, 328
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	2 cut(s)	288, 384
BtsCI	GGATG	3 cut(s)	259, 344, 406
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	377
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	230, 370
CviAII	CATG	3 cut(s)	107, 122, 367
CviJI	RGCY	7 cut(s)	59, 171, 211, 288, 294, 384, 409
CviKI_1	RGCY	7 cut(s)	59, 171, 211, 288, 294, 384, 409
CviQI	GTAC	2 cut(s)	230, 370
DpnI	GATC	3 cut(s)	105, 183, 261
DpnII	GATC	3 cut(s)	103, 181, 259
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	379
FaeI	CATG	3 cut(s)	110, 125, 370
FaiI	YATR	7 cut(s)	108, 123, 368, 433, 435, 437, 439
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	3 cut(s)	106, 121, 366
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	209, 317
FokI	GGATG	3 cut(s)	266, 331, 413
Fsp4HI	GCNGC	2 cut(s)	209, 317
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	209, 317
HaeIII	GGCC	2 cut(s)	288, 384
HapII	CCGG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	110, 125, 370
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	161, 309
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	2 cut(s)	161, 309
HpyCH4V	TGCA	6 cut(s)	65, 161, 194, 208, 235, 316
Hsp92II	CATG	3 cut(s)	110, 125, 370
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	103, 181, 259
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	2 cut(s)	291, 394
LpnPI	CCDG	9 cut(s)	51, 236, 270, 302, 348, 366, 383, 393, 407
Lsp1109I	GCAGC	2 cut(s)	220, 328
LweI	GCATC	2 cut(s)	52, 122
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	105, 183, 261
MboI	GATC	3 cut(s)	103, 181, 259
MboII	GAAGA	2 cut(s)	56, 269
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	51, 163
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	2 cut(s)	397, 406
MspA1I	CMGCKG	2 cut(s)	59, 211
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
NdeII	GATC	3 cut(s)	103, 181, 259
NlaIII	CATG	3 cut(s)	110, 125, 370
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	370
PciI	ACATGT	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	210, 318
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PscI	ACATGT	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	2 cut(s)	59, 211
RsaI	GTAC	2 cut(s)	231, 371
RsaNI	GTAC	2 cut(s)	230, 370
SalI	GTCGAC	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	2 cut(s)	209, 317
Sau3AI	GATC	3 cut(s)	103, 181, 259
Sau96I	GGNCC	1 cut(s)	377
ScaI	AGTACT	1 cut(s)	231
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	51, 163
SetI	ASST	5 cut(s)	61, 180, 213, 296, 417
SfaNI	GCATC	2 cut(s)	52, 122
SinI	GGWCC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	379
TaqI	TCGA	1 cut(s)	308
TatI	WGTACW	2 cut(s)	229, 369
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	208, 316
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	357
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	377
XceI	RCATGY	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.