Rh3AG222700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000557
Physical Location & Seq
Forward (+)
22845349 .. 22855612
10264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG222700.1

Sequence Viewer

Length: 291 bp
ATGGATGGGGATAAAAAGCCAAAATTTGTTAAAAAGACTTCCGGTGCCAGGATTCGAACCTGGATGGGGCAGTCGTGGGCTTCAAAGATTAAGAGATTAGAGTTCAATTTTCAGAGAGCTCTCAGATTACCCAGTTCTTGGAAAGAAGAGTTGTGCCAAAGAAGAGGCCCTGATTTTTCAAAACTGTGTTGTGTTATTGAATTGTTGATTTTGGGTATCAGTCACCCCAATGAACCCAGAGCCAAGAAGAAGTGGATGAGGCAAGAGGATGCCAAGAACTCTGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.28

Weight (kDa)

10.08

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000557)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10320 AT1G10320
fragaria_vesca FvH4_1g01270 FvH4_5g28020
malus_domestica MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica Prupe.1G585000_v2.0.a1
pyrus_communis pycom05g24740 pycom15g39000
rosa_chinensis RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccB7I CCANNNNNTGG 1 cut(s) 138
AcsI RAATTY 1 cut(s) 23
AfiI CCNNNNNNNGG 3 cut(s) 48, 66, 138
AgsI TTSAA 4 cut(s) 84, 106, 180, 200
AjnI CCWGG 2 cut(s) 47, 59
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw21I GWGCWC 1 cut(s) 121
AoxI GGCC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 55
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 49, 61
BfmI CTRYAG 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 49, 61
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 49, 61
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 66, 138
Bse1I ACTGG 1 cut(s) 132
BseBI CCWGG 2 cut(s) 49, 61
BseGI GGATG 4 cut(s) 10, 69, 261, 274
BseLI CCNNNNNNNGG 3 cut(s) 48, 66, 138
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 132
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 3 cut(s) 48, 66, 138
BsnI GGCC 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 132
BssMI GATC 1 cut(s) 283
Bst2UI CCWGG 2 cut(s) 49, 61
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 2 cut(s) 141, 157
BstBI TTCGAA 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 4 cut(s) 10, 69, 261, 274
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstNI CCWGG 2 cut(s) 49, 61
BstSCI CCNGG 2 cut(s) 47, 59
BstSFI CTRYAG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 168
BtsCI GGATG 4 cut(s) 10, 69, 261, 274
Cfr13I GGNCC 1 cut(s) 167
CviJI RGCY 5 cut(s) 19, 80, 119, 168, 242
CviKI_1 RGCY 5 cut(s) 19, 80, 119, 168, 242
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 2 cut(s) 141, 157
EarI CTCTTC 2 cut(s) 141, 157
Ecl136II GAGCTC 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 47, 59
EcoT38I GRGCYC 1 cut(s) 121
FokI GGATG 4 cut(s) 17, 76, 268, 281
FriOI GRGCYC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 42
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 42
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 114, 125, 283
HpyCH4III ACNGT 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 8 cut(s) 34, 46, 55, 61, 73, 145, 183, 250
LweI GCATC 1 cut(s) 259
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 3 cut(s) 158, 174, 259
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 23, 106, 200
MnlI CCTC 3 cut(s) 158, 252, 259
MseI TTAA 2 cut(s) 30, 90
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 49, 61
MvaI CCWGG 2 cut(s) 49, 61
NdeII GATC 1 cut(s) 283
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 221
NspV TTCGAA 1 cut(s) 55
PfeI GAWTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 47, 59
PspGI CCWGG 2 cut(s) 47, 59
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 2 cut(s) 30, 90
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 49, 61
SduI GDGCHC 1 cut(s) 121
SetI ASST 2 cut(s) 62, 121
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 287
SfuI TTCGAA 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 3 cut(s) 23, 106, 200
SstI GAGCTC 1 cut(s) 121
StyD4I CCNGG 2 cut(s) 47, 59
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 55
TasI AATT 3 cut(s) 23, 106, 200
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 30, 90
Tru9I TTAA 2 cut(s) 30, 90
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 138
XapI RAATTY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.