Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

20892726 .. 20902651

Gene Structure 9926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGCGGATGTTATGAGTTTAGGGGGTGAACGCATAATTAAGGCTGCGGAAGATGACCAACTATCTCGCAAACAAGAGATCGAAAATGCAAATGACAATGGTGATGATGACTGGGACTATGTAGAAGAGGGACCCGCTGAAATCATCATCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

51

Amino Acids

5.77

Weight (kDa)

4.05

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 47, 135
ApeKI	GCWGC	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	38, 113
AvaII	GGWCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	31
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	132, 133
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	116
BseGI	GGATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	31
BslFI	GGGAC	2 cut(s)	128, 144
BsmFI	GGGAC	2 cut(s)	128, 144
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	3 cut(s)	5, 47, 135
BspLI	GGNNCC	2 cut(s)	132, 133
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	131
CviJI	RGCY	1 cut(s)	44
CviKI_1	RGCY	1 cut(s)	44
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	131
FaiI	YATR	3 cut(s)	14, 35, 120
FaqI	GGGAC	2 cut(s)	128, 144
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HphI	GGTGA	2 cut(s)	38, 113
Hpy166II	GTNNAC	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	89
KflI	GGGWCCC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	78
LpnPI	CCDG	2 cut(s)	97, 136
Lsp1109I	GCAGC	1 cut(s)	31
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MboII	GAAGA	2 cut(s)	62, 137
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	137
NdeII	GATC	1 cut(s)	78
NlaIV	GGNNCC	2 cut(s)	132, 133
PkrI	GCNGC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	132, 133
PspPI	GGNCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	131
SgeI	CNNG	4 cut(s)	78, 86, 124, 146
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	3 cut(s)	5, 47, 135
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.