Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018146.1

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

208 .. 3154

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018146.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgggagagtcagaaacctcagcagacaaagaagcagacggaggcgttcagcctaaaacggaggcggggatgagccggaaggagaagtggaaagccatgaagaagatgaagcggaagcagacgcggaaggaaatcactctcaaagagcgtcaggaagaagaggcgaggccccaagatcctcaagagcttatcaacatggagcaagaggaggccaagaggtccgagagtgtgaggatcttgttcgaggagcgagagagagcttggattgaagccatggagattcgaaagaggaaacgaatcgaacaagaagaagaggagcgtagaattaaggatctggaagacgaagcactatttcgcaagcaacagatcaaaaatgcaaatgatgatggtgatgatgactgggagtatgtagaagagggacctgctgaaatcatctggaaggaaaatgaagataaagatcattgtcctttccatttgaaaactggccggagcttgtcgatttggtcggcattgcggcagagtcctttctacccagataaatcatccacactgcttatcaagaacatgtacaatggtcctggccttacttgggagcaggatgaggggcttgagttttactcaggcgacgcagggcattacatatatataggagtggtctacttggtgatgatcacagcatcgcccaatctagaggttcatgagctggatgagctcccggagcagtggcagaggttcaagctggcttggttttgtaaggagctgccgtggtataattccggggctttgattcggattctcaatgcccagaagaagtggataaggcaagaggacggcaagaactctggtattgttaactataggtctcattgtgaaattatatttccttccatcagtttaaggattatgataccaagaactctggtattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

309

Amino Acids

36.55

Weight (kDa)

5.33

Isoelectric Point (pI)

66.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	1 cut(s)	124
AciI	CCGC	4 cut(s)	65, 112, 124, 514
AclWI	GGATC	3 cut(s)	170, 242, 339
AcoI	YGGCCR	1 cut(s)	484
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	589
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	3 cut(s)	269, 478, 736
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	7 cut(s)	187, 260, 492, 703, 712, 739, 760
AluI	AGCT	7 cut(s)	187, 260, 492, 703, 712, 739, 760
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	3 cut(s)	170, 242, 339
AoxI	GGCC	4 cut(s)	167, 210, 484, 580
ApeKI	GCWGC	1 cut(s)	760
AspS9I	GGNCC	4 cut(s)	168, 219, 419, 575
AsuC2I	CCSGG	2 cut(s)	716, 778
AsuHPI	GGTGA	2 cut(s)	401, 676
AsuII	TTCGAA	1 cut(s)	283
AvaII	GGWCC	3 cut(s)	219, 419, 575
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	714
BbvCI	CCTCAGC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	747
BccI	CCATC	2 cut(s)	380, 896
BceAI	ACGGC	2 cut(s)	748, 847
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	669
BcnI	CCSGG	2 cut(s)	716, 778
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	1 cut(s)	856
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	515, 761
BlsI	GCNGC	2 cut(s)	516, 762
Bme1390I	CCNGG	3 cut(s)	579, 716, 778
Bme18I	GGWCC	3 cut(s)	219, 419, 575
BmgT120I	GGNCC	4 cut(s)	168, 219, 419, 575
BmiI	GGNNCC	2 cut(s)	170, 420
BmrFI	CCNGG	3 cut(s)	579, 716, 778
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	1 cut(s)	686
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
Bpu10I	CCTNAGC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	165, 629
BpuMI	CCSGG	2 cut(s)	716, 778
BsaBI	GATNNNNATC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	3 cut(s)	273, 764, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse1I	ACTGG	2 cut(s)	404, 487
Bse3DI	GCAATG	1 cut(s)	509
Bse8I	GATNNNNATC	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	273, 764, 777
BseGI	GGATG	4 cut(s)	75, 542, 604, 712
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	33, 633
BseNI	ACTGG	2 cut(s)	404, 487
BseRI	GAGGAG	3 cut(s)	221, 260, 329
BseXI	GCAGC	1 cut(s)	747
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	4 cut(s)	169, 212, 486, 582
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	4 cut(s)	76, 487, 716, 777
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	4 cut(s)	169, 212, 486, 582
Bso31I	GGTCTC	1 cut(s)	867
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	4 cut(s)	65, 112, 124, 514
BspANI	GGCC	4 cut(s)	169, 212, 486, 582
BspCNI	CTCAG	2 cut(s)	32, 632
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	170, 420
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	170, 242, 339
BspT104I	TTCGAA	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	867
BsrDI	GCAATG	1 cut(s)	509
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	404, 487
BssECI	CCNNGG	3 cut(s)	273, 764, 777
BssMI	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	579
Bst6I	CTCTTC	3 cut(s)	153, 306, 408
BstAUI	TGTACA	1 cut(s)	567
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	2 cut(s)	359, 741
BstDEI	CTNAG	2 cut(s)	19, 619
BstDSI	CCRYGG	2 cut(s)	273, 764
BstF5I	GGATG	4 cut(s)	75, 542, 604, 712
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	6 cut(s)	178, 237, 334, 369, 460, 672
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	709, 718
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	568
BstSCI	CCNGG	3 cut(s)	577, 714, 776
BstSFI	CTRYAG	1 cut(s)	856
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	747
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	3 cut(s)	175, 234, 331
BstYI	RGATCY	3 cut(s)	175, 234, 331
BsuRI	GGCC	4 cut(s)	169, 212, 486, 582
BtgI	CCRYGG	2 cut(s)	273, 764
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	4 cut(s)	75, 542, 604, 712
BtsI	GCAGTG	2 cut(s)	548, 728
BtsIMutI	CAGTG	2 cut(s)	548, 728
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	359, 741
CciI	TCATGA	1 cut(s)	697
Cfr13I	GGNCC	4 cut(s)	168, 219, 419, 575
CseI	GACGC	3 cut(s)	130, 137, 635
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	5 cut(s)	97, 196, 274, 565, 698
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	19, 619
DpnI	GATC	6 cut(s)	177, 236, 333, 368, 459, 671
DpnII	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	153, 306, 408
EarI	CTCTTC	3 cut(s)	153, 306, 408
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	867
Eco47I	GGWCC	3 cut(s)	219, 419, 575
Eco53kI	GAGCTC	1 cut(s)	712
EcoICRI	GAGCTC	1 cut(s)	712
EcoO109I	RGGNCCY	2 cut(s)	168, 419
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	5 cut(s)	100, 199, 277, 568, 701
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	5 cut(s)	96, 195, 273, 564, 697
FauI	CCCGC	1 cut(s)	58
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	515, 761
FokI	GGATG	4 cut(s)	82, 529, 611, 719
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	2 cut(s)	515, 761
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	2 cut(s)	515, 761
HaeIII	GGCC	4 cut(s)	169, 212, 486, 582
HapII	CCGG	4 cut(s)	76, 487, 716, 777
HgaI	GACGC	3 cut(s)	130, 137, 635
Hin1II	CATG	5 cut(s)	100, 199, 277, 568, 701
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	6 cut(s)	8, 280, 297, 520, 787, 793
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	4 cut(s)	76, 487, 716, 777
HphI	GGTGA	2 cut(s)	401, 676
Hpy166II	GTNNAC	2 cut(s)	658, 853
Hpy188I	TCNGA	3 cut(s)	13, 223, 792
Hpy188III	TCNNGA	7 cut(s)	152, 182, 335, 436, 559, 689, 698
Hpy8I	GTNNAC	2 cut(s)	658, 853
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	4 cut(s)	73, 121, 433, 894
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	709, 718
HpyF3I	CTNAG	2 cut(s)	19, 619
Hsp92II	CATG	5 cut(s)	100, 199, 277, 568, 701
Ksp22I	TGATCA	1 cut(s)	669
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
LmnI	GCTCC	8 cut(s)	199, 247, 316, 489, 592, 717, 718, 757
Lsp1109I	GCAGC	1 cut(s)	747
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	1 cut(s)	689
MalI	GATC	6 cut(s)	177, 236, 333, 368, 459, 671
MboI	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
MflI	RGATCY	3 cut(s)	175, 234, 331
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	3 cut(s)	324, 772, 873
MlyI	GAGTC	2 cut(s)	17, 529
MseI	TTAA	3 cut(s)	327, 852, 896
MspI	CCGG	4 cut(s)	76, 487, 716, 777
MspR9I	CCNGG	3 cut(s)	579, 716, 778
MvaI	CCWGG	1 cut(s)	579
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	709, 718
NciI	CCSGG	2 cut(s)	716, 778
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
NlaIII	CATG	5 cut(s)	100, 199, 277, 568, 701
NlaIV	GGNNCC	2 cut(s)	170, 420
NspI	RCATGY	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	283
PagI	TCATGA	1 cut(s)	697
PciI	ACATGT	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	280, 297, 787, 793
PfoI	TCCNGGA	1 cut(s)	714
PkrI	GCNGC	2 cut(s)	516, 762
PleI	GAGTC	2 cut(s)	16, 528
PpsI	GAGTC	2 cut(s)	16, 528
PpuMI	RGGWCCY	1 cut(s)	419
PscI	ACATGT	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	714
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	170, 420
PspPI	GGNCC	4 cut(s)	168, 219, 419, 575
PspPPI	RGGWCCY	1 cut(s)	419
PsuI	RGATCY	3 cut(s)	175, 234, 331
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	327, 852, 896
SatI	GCNGC	2 cut(s)	515, 761
Sau3AI	GATC	6 cut(s)	175, 234, 331, 366, 457, 669
Sau96I	GGNCC	4 cut(s)	168, 219, 419, 575
SchI	GAGTC	2 cut(s)	17, 529
ScrFI	CCNGG	3 cut(s)	579, 716, 778
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	856
SfuI	TTCGAA	1 cut(s)	283
SinI	GGWCC	3 cut(s)	219, 419, 575
SmlI	CTYRAG	2 cut(s)	180, 608
SmoI	CTYRAG	2 cut(s)	180, 608
Sse9I	AATT	3 cut(s)	324, 772, 873
SsiI	CCGC	4 cut(s)	65, 112, 124, 514
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	577, 714, 776
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	4 cut(s)	243, 283, 300, 497
TasI	AATT	3 cut(s)	324, 772, 873
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	517
TfiI	GAWTC	4 cut(s)	280, 297, 787, 793
Tru1I	TTAA	3 cut(s)	327, 852, 896
Tru9I	TTAA	3 cut(s)	327, 852, 896
TscAI	CASTG	2 cut(s)	555, 728
TseI	GCWGC	1 cut(s)	760
TspDTI	ATGAA	4 cut(s)	113, 122, 462, 686
TspGWI	ACGGA	2 cut(s)	54, 74
TspRI	CASTG	2 cut(s)	555, 728
VpaK11BI	GGWCC	3 cut(s)	219, 419, 575
XbaI	TCTAGA	1 cut(s)	688
XceI	RCATGY	1 cut(s)	568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.