Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

63072943 .. 63088920

Gene Structure 15978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG458600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATGAATCACAATCCGAACAATTCCTTTGAGATCGCTCAGCATCCAAGCGATTCTGTTTCAAGCCTCAGTTTCAGTCCCAAATCGAATCTTCTGGTCTCTACCTCTTGGGACAATCAGATCTTTACCTGTTATATTATTTTGCAATTGAGGGACTGGATTGGTAGTTTGTGCTTGAATTTGAGGCTTTTGTGGTGTTTGGGTTGGTGGTACTCTTGGCTGGGCTCCCAATTGAAATACTCCCTCAATCAGCTGATTGAGACTGAACAAGTACTGCATTTTGGAACTGAACAGGATGAAGATCATTGTCCTTTCCATTTGAAAACTGGCCGGAGCTTGTCGGTTTGGTCGGCATTGCAGCAGAGTCCTTTCTACCCAGATAAATCATCCACACTGCTTATCAAGAACATGTACAATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTTGAGGCCTATTCATTGCAAGTTCACTTTGGTGGAGATTCAGGCGACGCAGGGCATTACATATATATAGGAGTGGTCTACTTGGTGATGATCATAACATCGCCCAATCTAGAGGTTCATCAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTATAAGGAGCTGCCGTCGCATAATTCCGGGGCTTTGATTTGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGACGCCAAGAACTCTGACACATCGTCCACGTCAAGTCCACAACAAACACGTGCTATTCTCACTTTATTTCACACCGAACATTATCAACCAACACTAGACAGTATAATGTATGCATATGGAGTCTCAGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030628 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

277

Amino Acids

31.83

Weight (kDa)

5.48

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	1 cut(s)	598
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	178
AcvI	CACGTG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	702
AfaI	GTAC	3 cut(s)	212, 273, 413
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	2 cut(s)	408, 746
AgsI	TTSAA	5 cut(s)	63, 178, 235, 322, 607
AhdI	GACNNNNNGTC	1 cut(s)	721
AjiI	CACGTC	1 cut(s)	729
AjnI	CCWGG	1 cut(s)	421
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	7 cut(s)	253, 336, 574, 583, 610, 631, 827
AluI	AGCT	7 cut(s)	253, 336, 574, 583, 610, 631, 827
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	103, 254, 826
AoxI	GGCC	3 cut(s)	328, 424, 456
ApeKI	GCWGC	3 cut(s)	358, 631, 827
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	587, 649
AsuHPI	GGTGA	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	419
BanII	GRGCYC	2 cut(s)	227, 585
BbrPI	CACGTG	1 cut(s)	749
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	370, 618, 814
BceAI	ACGGC	1 cut(s)	619
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	2 cut(s)	587, 649
BcoDI	GTCTC	3 cut(s)	103, 254, 826
BfaI	CTAG	2 cut(s)	560, 794
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	3 cut(s)	359, 632, 828
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	3 cut(s)	360, 633, 829
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	423, 587, 649
Bme18I	GGWCC	1 cut(s)	419
BmeRI	GACNNNNNGTC	1 cut(s)	721
BmgBI	CACGTC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	3 cut(s)	423, 587, 649
BmsI	GCATC	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	473
BpuMI	CCSGG	2 cut(s)	587, 649
BsaAI	YACGTR	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	161, 331
Bse3DI	GCAATG	2 cut(s)	353, 464
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	6 cut(s)	43, 301, 386, 448, 583, 693
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	353, 464
BseMII	CTCAG	2 cut(s)	53, 82
BseNI	ACTGG	2 cut(s)	161, 331
BseXI	GCAGC	3 cut(s)	370, 618, 814
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	3 cut(s)	330, 426, 458
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	3 cut(s)	331, 587, 648
BslFI	GGGAC	3 cut(s)	63, 125, 167
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	3 cut(s)	103, 254, 826
BsmFI	GGGAC	3 cut(s)	63, 125, 167
BsnI	GGCC	3 cut(s)	330, 426, 458
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	227, 585
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	4 cut(s)	33, 120, 301, 540
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	3 cut(s)	330, 426, 458
BspCNI	CTCAG	2 cut(s)	52, 81
BspLI	GGNNCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	2 cut(s)	353, 464
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	161, 331
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	33, 120, 301, 540
BssNI	GRCGYC	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	800
BstACI	GRCGYC	1 cut(s)	702
BstAUI	TGTACA	1 cut(s)	411
BstBAI	YACGTR	1 cut(s)	749
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	3 cut(s)	39, 68, 823
BstF5I	GGATG	6 cut(s)	43, 301, 386, 448, 583, 693
BstKTI	GATC	4 cut(s)	36, 123, 304, 543
BstMAI	GTCTC	3 cut(s)	103, 254, 826
BstMBI	GATC	4 cut(s)	33, 120, 301, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	580, 589, 616, 637
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	421, 585, 647
BstV1I	GCAGC	3 cut(s)	370, 618, 814
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	330, 426, 458
BtgZI	GCGATG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	6 cut(s)	43, 301, 386, 448, 583, 693
BtsI	GCAGTG	2 cut(s)	392, 599
BtsIMutI	CAGTG	2 cut(s)	392, 599
Cac8I	GCNNGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	2 cut(s)	506, 710
Csp6I	GTAC	3 cut(s)	211, 272, 412
CviAII	CATG	2 cut(s)	409, 831
CviQI	GTAC	3 cut(s)	211, 272, 412
DdeI	CTNAG	3 cut(s)	39, 68, 823
DpnI	GATC	4 cut(s)	35, 122, 303, 542
DpnII	GATC	4 cut(s)	33, 120, 301, 540
DriI	GACNNNNNGTC	1 cut(s)	721
EaeI	YGGCCR	1 cut(s)	328
Eam1105I	GACNNNNNGTC	1 cut(s)	721
EciI	GGCGGA	1 cut(s)	613
Ecl136II	GAGCTC	1 cut(s)	583
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	227, 585
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	583
Eco72I	CACGTG	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	421
EcoT22I	ATGCAT	1 cut(s)	814
EcoT38I	GRGCYC	2 cut(s)	227, 585
FaeI	CATG	2 cut(s)	412, 834
FaqI	GGGAC	3 cut(s)	63, 125, 167
FatI	CATG	2 cut(s)	408, 830
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	359, 632, 828
FokI	GGATG	6 cut(s)	30, 308, 373, 455, 590, 700
FriOI	GRGCYC	2 cut(s)	227, 585
Fsp4HI	GCNGC	3 cut(s)	359, 632, 828
FspBI	CTAG	2 cut(s)	560, 794
GluI	GCNGC	3 cut(s)	359, 632, 828
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	330, 426, 458
HapII	CCGG	3 cut(s)	331, 587, 648
HgaI	GACGC	2 cut(s)	506, 710
Hin1I	GRCGYC	1 cut(s)	702
Hin1II	CATG	2 cut(s)	412, 834
HinfI	GANTC	7 cut(s)	7, 53, 88, 364, 488, 664, 819
HpaII	CCGG	3 cut(s)	331, 587, 648
HphI	GGTGA	1 cut(s)	547
Hpy166II	GTNNAC	4 cut(s)	475, 529, 726, 737
Hpy188I	TCNGA	3 cut(s)	18, 120, 715
Hpy188III	TCNNGA	2 cut(s)	403, 560
Hpy8I	GTNNAC	4 cut(s)	475, 529, 726, 737
Hpy99I	CGWCG	2 cut(s)	500, 640
HpyCH4III	ACNGT	1 cut(s)	800
HpyCH4IV	ACGT	2 cut(s)	728, 748
HpyCH4V	TGCA	6 cut(s)	145, 277, 358, 469, 812, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	580, 589, 616, 637
HpyF3I	CTNAG	3 cut(s)	39, 68, 823
HpySE526I	ACGT	2 cut(s)	728, 748
Hsp92I	GRCGYC	1 cut(s)	702
Hsp92II	CATG	2 cut(s)	412, 834
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	33, 120, 301, 540
LmnI	GCTCC	6 cut(s)	230, 333, 436, 588, 589, 628
Lsp1109I	GCAGC	3 cut(s)	370, 618, 814
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	560, 794
MaeII	ACGT	2 cut(s)	728, 748
MalI	GATC	4 cut(s)	35, 122, 303, 542
MboI	GATC	4 cut(s)	33, 120, 301, 540
MboII	GAAGA	3 cut(s)	83, 311, 691
MfeI	CAATTG	2 cut(s)	146, 230
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	227, 585
MluCI	AATT	5 cut(s)	22, 146, 178, 230, 643
MlyI	GAGTC	2 cut(s)	373, 828
Mph1103I	ATGCAT	1 cut(s)	814
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	3 cut(s)	253, 574, 827
MspI	CCGG	3 cut(s)	331, 587, 648
MspR9I	CCNGG	3 cut(s)	423, 587, 649
MunI	CAATTG	2 cut(s)	146, 230
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	580, 589, 616, 637
NciI	CCSGG	2 cut(s)	587, 649
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	4 cut(s)	33, 120, 301, 540
NlaIII	CATG	2 cut(s)	412, 834
NlaIV	GGNNCC	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	458
PciI	ACATGT	1 cut(s)	408
PfeI	GAWTC	5 cut(s)	7, 53, 88, 488, 664
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	360, 633, 829
PleI	GAGTC	2 cut(s)	372, 827
PmaCI	CACGTG	1 cut(s)	749
PmlI	CACGTG	1 cut(s)	749
PpsI	GAGTC	2 cut(s)	372, 827
Ppu21I	YACGTR	1 cut(s)	749
PscI	ACATGT	1 cut(s)	408
PsiI	TTATAA	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	421
PspCI	CACGTG	1 cut(s)	749
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	3 cut(s)	253, 574, 827
RsaI	GTAC	3 cut(s)	212, 273, 413
RsaNI	GTAC	3 cut(s)	211, 272, 412
RseI	CAYNNNNRTG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	585
SatI	GCNGC	3 cut(s)	359, 632, 828
Sau3AI	GATC	4 cut(s)	33, 120, 301, 540
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	2 cut(s)	373, 828
ScrFI	CCNGG	3 cut(s)	423, 587, 649
SduI	GDGCHC	2 cut(s)	227, 585
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	5 cut(s)	22, 146, 178, 230, 643
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	2 cut(s)	560, 794
SstI	GAGCTC	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	421, 585, 647
TaaI	ACNGT	1 cut(s)	800
TaiI	ACGT	2 cut(s)	731, 751
TaqI	TCGA	1 cut(s)	86
TasI	AATT	5 cut(s)	22, 146, 178, 230, 643
TatI	WGTACW	2 cut(s)	271, 411
TfiI	GAWTC	5 cut(s)	7, 53, 88, 488, 664
TscAI	CASTG	2 cut(s)	399, 599
TseI	GCWGC	3 cut(s)	358, 631, 827
TspDTI	ATGAA	4 cut(s)	20, 312, 453, 557
TspRI	CASTG	2 cut(s)	399, 599
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	2 cut(s)	560, 794
ZrmI	AGTACT	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.