Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Reverse (-)

55055729 .. 55057306

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG349500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATCACAGCGTCGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGAAGCTGCCGTCGCATAATTCTGGGGCTTTGATTCGGATTCTCAATGCCCAGAAGAAGTGGATGAGGCAAGAGGACGCCAAGAACTCTGGTATTCCCGACAGTATAAATTTAGCAATTTCACCTGCTAATCAAGATCTTGTTACATCAGATGCAATTAAAATCCCTCGTGAAGTGGATCCAACAGGGAAGAGGACACTCGAAGTAGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

7.9

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	260, 273
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	70
AluBI	AGCT	4 cut(s)	37, 46, 73, 94
AluI	AGCT	4 cut(s)	37, 46, 73, 94
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	260, 273
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	196
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	2 cut(s)	32, 255
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	296
BseGI	GGATG	2 cut(s)	46, 156
BseXI	GCAGC	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	50, 297
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	3, 223, 265
BspACI	CCGC	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	260, 273
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	3 cut(s)	3, 223, 265
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	2 cut(s)	32, 255
Bst2BI	CACGAG	2 cut(s)	32, 255
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	46, 156
BstKTI	GATC	3 cut(s)	6, 226, 268
BstMBI	GATC	3 cut(s)	3, 223, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	223, 265
BstYI	RGATCY	2 cut(s)	223, 265
BtsCI	GGATG	2 cut(s)	46, 156
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	296
CseI	GACGC	1 cut(s)	173
CviJI	RGCY	8 cut(s)	37, 46, 73, 77, 82, 94, 116, 296
CviKI_1	RGCY	8 cut(s)	37, 46, 73, 77, 82, 94, 116, 296
DpnI	GATC	3 cut(s)	5, 225, 267
DpnII	GATC	3 cut(s)	3, 223, 265
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	48
FaiI	YATR	2 cut(s)	105, 194
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	53, 163
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	95
HapII	CCGG	2 cut(s)	50, 297
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	121, 127
HpaII	CCGG	2 cut(s)	50, 297
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	126, 238
Hpy188III	TCNNGA	5 cut(s)	23, 32, 185, 221, 257
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	16, 103
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
Hsp92I	GRCGYC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 223, 265
LmnI	GCTCC	2 cut(s)	51, 52
LpnPI	CCDG	8 cut(s)	23, 59, 63, 96, 152, 162, 225, 258
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	5, 225, 267
MboI	GATC	3 cut(s)	3, 223, 265
MboII	GAAGA	2 cut(s)	154, 289
MflI	RGATCY	2 cut(s)	223, 265
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	4 cut(s)	106, 196, 204, 243
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	19, 57, 147, 154, 264, 273
MseI	TTAA	1 cut(s)	246
MspI	CCGG	2 cut(s)	50, 297
MspR9I	CCNGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	43, 52, 79, 100
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	3 cut(s)	3, 223, 265
NlaIV	GGNNCC	1 cut(s)	267
PaqCI	CACCTGC	1 cut(s)	220
PfeI	GAWTC	2 cut(s)	121, 127
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	223, 265
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	3 cut(s)	3, 223, 265
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	30, 39, 48, 68, 75, 96, 214
SfaNI	GCATC	1 cut(s)	229
Sse9I	AATT	4 cut(s)	106, 196, 204, 243
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	288
TasI	AATT	4 cut(s)	106, 196, 204, 243
TfiI	GAWTC	2 cut(s)	121, 127
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	62
XapI	RAATTY	1 cut(s)	196
XbaI	TCTAGA	1 cut(s)	22
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.