Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000557

Physical Location & Seq

Genomic Coordinates Forward (+)

51456696 .. 51463175

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG285800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCCTGGCCTTACTTGGGAGCAGGATGAGGGGCTTGAGGTCTGTTAATGCTGCCATGCCTTCATCTGATTCTTATTCATTGCAAGTTCACTTTGGTGGAGATTCAGGCGACGCAGGGCATTACATATATATAGGAGTGGTCTACTTGGTGATGATCATAGCATCGCCCAATCTAGAGGTTCATGAGCTGGATGAGCTCCCGGAGCAGTGGCGGAGGTTCAAGCTGGCTTGGCTTTGTAAGGAGCTGCCATCGCATAATTCTGGGGCTTTGATTTGGATTCTCAATGCCCAAAAGAAGTGGATGAGGCAAGAGGACGCCAAGAACTTTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019684 GO:0022607 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045292 GO:0046483 GO:0048564 GO:0065003 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LAGLIDADG_2 PPR

Protein Analysis

112

Amino Acids

12.75

Weight (kDa)

6.06

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10320 AT1G10320
fragaria_vesca	FvH4_1g01270 FvH4_5g28020
malus_domestica	MD05G1262900.v1.1 MD05G1263000.v1.1 MD15G1442200.v1.1 MD15G1442300.v1.1
prunus_persica	Prupe.1G585000_v2.0.a1
pyrus_communis	pycom05g24740 pycom15g39000
rosa_chinensis	RchiOBHm_Chr1g0376021 RchiOBHm_Chr2g0152801 RchiOBHm_Chr6g0272511 RchiOBHm_Chr6g0272531 RchiOBHm_Chr6g0289931 RchiOBHm_Chr6g0289941 RchiOBHm_Chr6g0302241 RchiOBHm_Chr7g0221381 RchiOBHm_Chr7g0221391 RchiOBHm_Chr7g0221411
rosa_laevigata	RLG00000000942 RLG00000002158 RLG00000013669 RLG00000013670
rosa_multiflora	Rmu_co8352637.1_g000001 Rmu_co8463189.1_g000001 Rmu_sc0000092.1_g000005 Rmu_sc0001575.1_g000019 Rmu_sc0001579.1_g000007 Rmu_sc0002847.1_g000017 Rmu_sc0009283.1_g000001 Rmu_sc0018146.1_g000002 Rmu_sc0026927.1_g000002 Rmu_sc0026927.1_g000003 Rmu_sc0031601.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238370 Rroxscaffold_5G00353980 Rroxscaffold_6G00399580 Rroxscaffold_7G00181850 Rroxscaffold_7G00196190 Rroxscaffold_7G00212980
rosa_rugosa	Rorug02G0202700 Rorug06G0053300 Rorug06G0073400 Rorug06G0208900 Rorug07G0202300 Rorug07G0202300 Rorug07G0202300
rosa_samantha	Rh1AG059200 Rh1AG066100 Rh1AG285800 Rh3AG222700 Rh3DG354600 Rh5BG508200 Rh5BG539300 Rh5BG541200 Rh5CG264600 Rh5CG531900 Rh5CG562800 Rh5CG563900 Rh5DG285300 Rh6AG094100 Rh6AG186000 Rh6AG186100 Rh6AG254700 Rh6BG189200 Rh6BG258000 Rh6CG186900 Rh6CG187000 Rh6DG178300 Rh6DG178700 Rh6DG349500 Rh7AG341800 Rh7AG341900 Rh7AG458600 Rh7BG332500 Rh7CG359600 Rh7DG340200 Rh7DG340300
rosa_wichuraiana	Rw2G036370 Rw6G016030 Rw7G029050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	223, 332
AjnI	CCWGG	1 cut(s)	6
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	4 cut(s)	190, 199, 226, 247
AluI	AGCT	4 cut(s)	190, 199, 226, 247
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	53, 247
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	40, 234
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	8
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	2 cut(s)	54, 248
BlsI	GCNGC	2 cut(s)	55, 249
Bme1390I	CCNGG	2 cut(s)	8, 203
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	2 cut(s)	8, 203
BmsI	GCATC	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	8
BseGI	GGATG	3 cut(s)	33, 199, 309
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMI	GCAATG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	40, 234
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	18
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	80
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	33, 199, 309
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	4 cut(s)	196, 205, 232, 253
BstNI	CCWGG	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	6, 201
BstV1I	GCAGC	2 cut(s)	40, 234
BsuRI	GGCC	1 cut(s)	11
BtgZI	GCGATG	2 cut(s)	150, 237
BtsCI	GGATG	3 cut(s)	33, 199, 309
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	228
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	2 cut(s)	122, 326
CspCI	CAANNNNNGTGG	2 cut(s)	281, 316
CviAII	CATG	2 cut(s)	58, 185
CviJI	RGCY	9 cut(s)	11, 36, 190, 199, 226, 230, 235, 247, 269
CviKI_1	RGCY	9 cut(s)	11, 36, 190, 199, 226, 230, 235, 247, 269
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	229
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	2 cut(s)	61, 188
FaiI	YATR	8 cut(s)	59, 128, 130, 132, 134, 161, 186, 258
FatI	CATG	2 cut(s)	57, 184
FbaI	TGATCA	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	54, 248
FokI	GGATG	3 cut(s)	40, 206, 316
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	54, 248
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	2 cut(s)	54, 248
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	2 cut(s)	122, 326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	61, 188
HinfI	GANTC	3 cut(s)	71, 104, 280
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	91, 145
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	176, 185
Hpy8I	GTNNAC	2 cut(s)	91, 145
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	85
HpyF10VI	GCNNNNNNNGC	4 cut(s)	196, 205, 232, 253
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	61, 188
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	4 cut(s)	21, 204, 205, 244
LpnPI	CCDG	8 cut(s)	10, 20, 93, 102, 176, 212, 216, 249
Lsp1109I	GCAGC	2 cut(s)	40, 234
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	176
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	6 cut(s)	24, 33, 172, 210, 300, 307
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	96
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	8, 203
MvaI	CCWGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	4 cut(s)	196, 205, 232, 253
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	61, 188
OliI	CACNNNNGTG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	71, 104, 280
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	55, 249
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	6
PspGI	CCWGG	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	54, 248
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	8, 203
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	7 cut(s)	44, 183, 192, 201, 221, 228, 249
SfaNI	GCATC	1 cut(s)	173
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	6, 201
TasI	AATT	1 cut(s)	259
TfiI	GAWTC	3 cut(s)	71, 104, 280
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	2 cut(s)	53, 247
TspDTI	ATGAA	3 cut(s)	54, 69, 173
TspRI	CASTG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	4
XbaI	TCTAGA	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.