Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

35745301 .. 35745615

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTGCTTGCAGATTTATACTGGCAAATTCGGGAGCTCGTCTCCAATGTTCGTTGTGCTAGCGACCGTTGCATTGCTCAATTTATACTGCTTTGCCTGGTTTGTGAAGGAAGCAATCACTGGAACAAAGGGCATTGCAGAAGTTTATGAGGCAATGTTCTTGCAGATTCTTCTATGTGTGGTTTTGATTGTCATTAACCAACCGTTATACGAAGCGCTATACCTAAGGAAGGACAAGGGGAAGCTGCCGAGCTCTGTAGCAATTAGGTCCATGGCATTTGCTGGATTTGCTTGTTTATGTTTCAAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

8.88

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	26, 305
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	36, 244, 252
AluI	AGCT	3 cut(s)	36, 244, 252
Alw21I	GWGCWC	2 cut(s)	38, 254
Alw26I	GTCTC	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	26, 305
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	267
AsuNHI	GCTAGC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	38, 254
Bbv12I	GWGCWC	2 cut(s)	38, 254
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	25, 124
Bse21I	CCTNAGG	1 cut(s)	224
Bse3DI	GCAATG	3 cut(s)	71, 132, 159
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	3 cut(s)	71, 132, 159
BseNI	ACTGG	2 cut(s)	25, 124
BseXI	GCAGC	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	38, 254
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	38, 254
Bsp19I	CCATGG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	71, 132, 159
BsrI	ACTGG	2 cut(s)	25, 124
BssECI	CCNNGG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	67, 204
BstC8I	GCNNGC	2 cut(s)	8, 60
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 287
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	8, 60
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	267
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	3 cut(s)	36, 244, 252
CviKI_1	RGCY	3 cut(s)	36, 244, 252
DdeI	CTNAG	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	36, 252
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	38, 254
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	216
Eco53kI	GAGCTC	2 cut(s)	36, 252
Eco81I	CCTNAGG	1 cut(s)	224
EcoICRI	GAGCTC	2 cut(s)	36, 252
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	38, 254
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	274
FaiI	YATR	9 cut(s)	18, 85, 147, 175, 208, 220, 272, 298, 311
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	38, 254
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	218
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	100, 223
HpyCH4III	ACNGT	2 cut(s)	67, 204
HpyCH4V	TGCA	4 cut(s)	10, 71, 137, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 287
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	6, 82, 105, 109, 267
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	59
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	38, 254
MluCI	AATT	4 cut(s)	26, 79, 261, 305
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	68, 287
NcoI	CCATGG	1 cut(s)	270
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	246
Psp124BI	GAGCTC	2 cut(s)	38, 254
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	267
SacI	GAGCTC	2 cut(s)	38, 254
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	38, 254
SetI	ASST	5 cut(s)	38, 225, 246, 254, 269
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	4 cut(s)	26, 79, 261, 305
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	2 cut(s)	38, 254
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	67, 204
TasI	AATT	4 cut(s)	26, 79, 261, 305
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	26, 305
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.