pycom03g02400

Belongs to the glycosyltransferase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000273
Physical Location & Seq
Reverse (-)
1799729 .. 1800326
598 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02400.2

Sequence Viewer

Length: 450 bp
ATGAACAGATATGAAAATGAGTTGCCGGGAGTGGATGTATTTGTGTGCACAGCGGACCCAACCATAGAGCCGCCAATTATGGTGATTAACACGGTTCTGTCAGTGATGGCTTATGATTACCCGCCGGAGAAGCTGAGCGTCTATCTGTCCGATGATGGCGGGTCGGAACTTACATACTATGCTCTCTTGGAGGCCGCTGAATTTGCAAAGCATTGGATACCATATTGCAAGAGGTACAAAGTGGAGCCAAGGTCACCTGCTGCTTATTTTGTCACAGTATCTGCTGATGCAATTGATCATCATCAGGCTAAAGATTTCTGGGTTATTAAGTTAGTTATGGGTTTTCTCACGTTTACTTCTTATTTTCTCAAAAGGGGCAAGCATCATTGTGGGGTATCATTACGTGTAATGTTGAATGTTTTTAACCACTTACTGCAACGTTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulose_synt

Protein Analysis

150

Amino Acids

17.18

Weight (kDa)

6.28

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55850
fragaria_vesca FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AciI CCGC 5 cut(s) 53, 71, 122, 159, 195
AclI AACGTT 1 cut(s) 439
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 1 cut(s) 415
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 50
Alw44I GTGCAC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 281
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 94, 246
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 247
BccI CCATC 2 cut(s) 100, 149
BciVI GTATCC 1 cut(s) 210
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 210
BisI GCNGC 3 cut(s) 71, 195, 261
BlpI GCTNAGC 1 cut(s) 134
BlsI GCNGC 3 cut(s) 72, 196, 262
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 57, 246
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 2 cut(s) 277, 391
Bpu1102I GCTNAGC 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 248
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 236, 266
Bse8I GATNNNNATC 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 300
BseMII CTCAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 2 cut(s) 26, 125
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 295
Bsp1720I GCTNAGC 1 cut(s) 134
BspACI CCGC 5 cut(s) 53, 71, 122, 159, 195
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 57, 246
BspMI ACCTGC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 94, 277
BstBAI YACGTR 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 134
BstEII GGTNACC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 130, 203
BstPI GGTNACC 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 25
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 247
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 380
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 6 cut(s) 70, 110, 133, 194, 247, 308
CviKI_1 RGCY 6 cut(s) 70, 110, 133, 194, 247, 308
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 134
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 55
Eco91I GGTNACC 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaiI YATR 8 cut(s) 12, 65, 80, 114, 175, 180, 223, 338
FauI CCCGC 2 cut(s) 129, 152
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 71, 195, 261
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 3 cut(s) 71, 195, 261
GluI GCNGC 3 cut(s) 71, 195, 261
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 26, 125
HgaI GACGC 1 cut(s) 127
HpaII CCGG 2 cut(s) 26, 125
HphI GGTGA 2 cut(s) 94, 246
Hpy166II GTNNAC 2 cut(s) 48, 354
Hpy188I TCNGA 2 cut(s) 151, 166
Hpy8I GTNNAC 2 cut(s) 48, 354
HpyCH4III ACNGT 2 cut(s) 94, 277
HpyCH4IV ACGT 3 cut(s) 350, 403, 439
HpyCH4V TGCA 5 cut(s) 48, 206, 228, 290, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 203
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 3 cut(s) 350, 403, 439
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 39, 138, 270, 290, 304
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 277, 391
MaeII ACGT 3 cut(s) 350, 403, 439
MaeIII GTNAC 2 cut(s) 252, 271
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 436
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 3 cut(s) 75, 200, 291
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 184, 225
MseI TTAA 3 cut(s) 87, 327, 423
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 2 cut(s) 53, 197
MspI CCGG 2 cut(s) 26, 125
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 291
MwoI GCNNNNNNNGC 2 cut(s) 130, 203
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 57, 246
NmuCI GTSAC 2 cut(s) 252, 271
PaqCI CACCTGC 1 cut(s) 265
PkrI GCNGC 3 cut(s) 72, 196, 262
Ppu21I YACGTR 1 cut(s) 404
Psp1406I AACGTT 1 cut(s) 439
PspEI GGTNACC 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 57, 246
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 3 cut(s) 87, 327, 423
SatI GCNGC 3 cut(s) 71, 195, 261
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 50
SetI ASST 7 cut(s) 135, 236, 254, 259, 353, 406, 442
SfaNI GCATC 2 cut(s) 277, 391
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 3 cut(s) 75, 200, 291
SsiI CCGC 5 cut(s) 53, 71, 122, 159, 195
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 2 cut(s) 94, 277
TaiI ACGT 3 cut(s) 353, 406, 442
TasI AATT 3 cut(s) 75, 200, 291
TauI GCSGC 2 cut(s) 73, 197
Tru1I TTAA 3 cut(s) 87, 327, 423
Tru9I TTAA 3 cut(s) 87, 327, 423
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 2 cut(s) 252, 271
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 252, 271
TspDTI ATGAA 2 cut(s) 17, 27
TspRI CASTG 1 cut(s) 108
VneI GTGCAC 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.