Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

62245849 .. 62247404

Gene Structure 1556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0449500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCTTGAGCGAGTAGCAGAGAAGATGGAAAAAGACTTGATCATGGTTGGTGCTACAGCTGTGGAGGACAAATTGCAAAAAAGGGCTGTGATGGCCAGTGACTTTGCTATTGCCCAGTTTCAGTTTTTGGAGAGACTTTTGGTTGTCCATGGACATTGGTGCTATAAAAGGATTGCTCAGATGGCTGATGCTGCTGCTTCCAAGAATACTTCAACCATGACAAAGTCCTCTTCATCATCTCAACCCAATTGTGGATCACAGATCTCTAAAGAGCTGGTCAAGGCACATCAATACCGAGCTATTTATTTGACTTTTCACTTCATTCATTTGCTTGTGTTTAGGGCATGCACTAGAATGCTTTTCTTGTGTAAAATGTTGGTTTCAATGATTGGGAAATGCACCCCTTTTGCTTTTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

9.35

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PhoLip_ATPase_C	PF16212	30 - 71	4.6e-16	Phospholipid-translocating P-type ATPase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	93
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	213, 384, 416
AluBI	AGCT	3 cut(s)	59, 274, 299
AluI	AGCT	3 cut(s)	59, 274, 299
Alw26I	GTCTC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	191, 194
BalI	TGGCCA	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	178, 181
BccI	CCATC	3 cut(s)	19, 85, 175
BclI	TGATCA	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	54
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	192, 195
BlsI	GCNGC	2 cut(s)	193, 196
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	178
BmuI	ACTGGG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	96, 115
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	96, 115
BseXI	GCAGC	2 cut(s)	178, 181
BshFI	GGCC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	95
Bsp143I	GATC	3 cut(s)	39, 254, 261
Bsp19I	CCATGG	1 cut(s)	148
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	96, 115
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	39, 254, 261
BssT1I	CCWWGG	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	42, 257, 264
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	3 cut(s)	39, 254, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 182, 191
BstNSI	RCATGY	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	178, 181
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	346
CviAII	CATG	4 cut(s)	43, 149, 217, 345
CviJI	RGCY	6 cut(s)	59, 86, 95, 185, 274, 299
CviKI_1	RGCY	6 cut(s)	59, 86, 95, 185, 274, 299
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	41, 256, 263
DpnII	GATC	3 cut(s)	39, 254, 261
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	4 cut(s)	46, 152, 220, 348
FaiI	YATR	5 cut(s)	44, 150, 165, 218, 346
FatI	CATG	4 cut(s)	42, 148, 216, 344
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	192, 195
Fsp4HI	GCNGC	2 cut(s)	192, 195
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	2 cut(s)	192, 195
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	46, 152, 220, 348
Hpy188I	TCNGA	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	76, 348, 399
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 182, 191
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	46, 152, 220, 348
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	39, 254, 261
LpnPI	CCDG	3 cut(s)	109, 128, 260
Lsp1109I	GCAGC	2 cut(s)	178, 181
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	41, 256, 263
MboI	GATC	3 cut(s)	39, 254, 261
MboII	GAAGA	2 cut(s)	34, 222
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	71, 247
MluNI	TGGCCA	1 cut(s)	95
MnlI	CCTC	2 cut(s)	58, 238
Mox20I	TGGCCA	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	421
MslI	CAYNNNNRTG	1 cut(s)	353
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	92, 182, 191
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	39, 254, 261
NlaIII	CATG	4 cut(s)	46, 152, 220, 348
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	348
PaeI	GCATGC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	360
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	193, 196
PsuI	RGATCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	421
SatI	GCNGC	2 cut(s)	192, 195
Sau3AI	GATC	3 cut(s)	39, 254, 261
SetI	ASST	3 cut(s)	61, 276, 301
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
SphI	GCATGC	1 cut(s)	348
Sse9I	AATT	2 cut(s)	71, 247
SspMI	CTAG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	148
TasI	AATT	2 cut(s)	71, 247
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	2 cut(s)	191, 194
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	222, 310, 314
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	223
XceI	RCATGY	1 cut(s)	348
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.