Rh5DG538000

emp24/gp25L/p24 family/GOLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000273
Physical Location & Seq
Forward (+)
82985517 .. 82996394
10878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG538000.1

Sequence Viewer

Length: 2220 bp
ATGGGAAATGAAGGGTATTTACCATTGTTTGAGACCAAGAGAGCAAAGGGAAGAGTCATATATAGGGTGTTTGCTGCTTCTTTGTTTGCAGGTATATGCTTGGTTTGGGTTTATAGGGCGAGTCACATACCAAAACCAGGAGAAGATGGAAGGTTTGGGTGGATGGGATTGTTGGGTGCTGAGTTATGGTTCGGGCTTTATTGGATCCTCACCCAATCCTGCCGATGGAACCTTACCTTTAGGCAAACTTTCAAGGATAGACTATCTCAGAGATTTGAGAATGAGTTGCCGGGAGTGGACATTTTTGTGACCACGGCAGACCCTATCATAGAGCCACCAATGATGGTCATGAACACCGTTCTGTCAGTCATGGCTTATGATTACCCAACCGAGAAGATCAGCGTGTATCTATCCGATGATGGCGGTTCCGAGCTTACATACTACGCACTCTTGGAGGCTGCTGAGTTTGCTAAGCAGTGGATACCATACTGCAAGAAATACAGTGTGGAGCCAAGGTCCCCAGTTGCTTACTTTGTCTCAATAGCTACTGATGCAGTTGGTGTTGATGATAACAAGGCTAATGACTTGGCTGTCATTAAGAAATCATACAAGGACATGGAGACTAAAATCGAAAATGCAGTCAAATTAGGCCACATTCCAGAGAAAGTACGATCGAAACAGAAAGGCTTTTCTCAATGGGACTCACATTTGTCTAAACGTGATCATGACACCTATCTCCAAGTAGTAATTGATGGAAGAGACCCAAAGGCAATCGATGTTGAAGGACTTGTACTGCCAACTTTGGTGTATTTAGCTCGGGAGAAAAGACCACAGTATCACCATAACTTCAAAGCTGGCTCTATGAATGCATTGATTAGGGTTTCTTCAAATATTAGCAACGGGAAGGTCATTCTAAATGTAGACTGTGACATGTATTCAAACAATTCCATGGCCATAAGGGATGCACTTTGCTGCTTAATGGATGAAGAAAAAGGCCATGAAGTTGCATTCATACAATTCCCACAAAATTTTGAAAACCTCACCAAGAATGAATTATATATTTCATTCATGCGAACAATCAGCGAGGTGGAATTGCATGCTTTGGATGGTTTTGATGGCCCTTTTTACGTTGGAAGTGGATGCTTCCACAGAAGGGATACTCTTTGTGGAAGGAAGTTCACCAAGGGATGTAAGAGTGACATGAAATGGGAGATCAGTAGAAAAAGAGAAGAAACTACAATTCATGAATTGGAAGAAGATTCAAAAGGTCTTGCAAACTGTGCATACGAGCAAAACACTGAGTGGGGAAAAGAGATGGGTTTGAAATATGGTTGTGCAATTGAAGACGTGTTCACGGGGTTATCAATCCAATGCCGCGGTTGGAGATCGGTGTACTTGAACCCAACAAGGAAAGCTTTCTTAGGAGTAGCTCCAACGACATTGCTTCAGATGCTGGTGCAGCAAAAGAGATGGTCGGAAGGTAGTTTCCAGATTTTGCTTTCACGGCACAATCCTGCATTCTCTGATCAGATTAGCTTGGGCCAAAAACTTGGATACGCATATGTCGGGGCTTGGTCTATCAATTTCCTACCAACCCTATTTTACACAGTGATCCCTTCCCTTTACCTCCTTAAGGGCATTTCCTTATTTCCTCGGGTTTCAAGTCCATGGATCATACCATTTGCATATGTGATAATTGCCAAGTACACTGGGAGCTTTTTGGAGTTTCTATGGGCAGGTGGCTCAGCCTTAGGTTGGTGGAACGACCAACGAATGTGGCTATACAAAAGATCAAGCTCCTACATATTTTCCTTCATCGACACCATTTTGTACCTTTTGGGGTATTCTGATTCGGCATTTGTAATAACAGCCAAGACGTCGGATGAAGATGAGTCGCAACGATATGAGAAAGAGATTATGGAATTCGGAGCCTCTTCTCCACTGTTTTCCGTATTGGCATCACTTGCAGTACTAAATTTGTATTGCTTTGCTGGTTTTGTGAAGGAAGCAATCAGTCTGGGATCAAAGGGCGGCATTGCAGAAGTTTACGATACAATGGCATTGCAAATTCTACTATGTGGGATTTTGATTCTCATCAACCTGCCTTTGTACCAAGCCCTTTATCTAAGGAAGGACAAGGGGAAGTTGCCAAGCTCCATAGCTTTGAAGTCGATGGCATTTGGTGTCGTTGGTTTAACATGTTTCAATTTTTCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulose_synt EMP24_GP25L

Protein Analysis

739

Amino Acids

83.76

Weight (kDa)

7.12

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cellulose_synt PF03552 99 - 398 5.6e-91 Cellulose synthase
Cellulose_synt PF03552 423 - 670 1.5e-43 Cellulose synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55850
fragaria_vesca FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1727
AasI GACNNNNNNGTC 1 cut(s) 590
AatII GACGTC 1 cut(s) 1880
Acc36I ACCTGC 3 cut(s) 80, 1727, 2109
AccI GTMKAC 1 cut(s) 921
AccII CGCG 1 cut(s) 1377
AciI CCGC 4 cut(s) 423, 1375, 1377, 2031
AclWI GGATC 5 cut(s) 199, 212, 1606, 1679, 2029
AcoI YGGCCR 1 cut(s) 951
AcsI RAATTY 4 cut(s) 1027, 1922, 1975, 2067
AcuI CTGAAG 1 cut(s) 1430
AcyI GRCGYC 1 cut(s) 1877
AdeI CACNNNGTG 1 cut(s) 1302
AfaI GTAC 7 cut(s) 669, 792, 1394, 1706, 1832, 1971, 2111
AfiI CCNNNNNNNGG 5 cut(s) 137, 225, 1153, 1633, 1755
AflII CTTAAG 1 cut(s) 1631
AflIII ACRYGT 3 cut(s) 930, 1347, 2198
AjiI CACGTC 1 cut(s) 1348
AjnI CCWGG 1 cut(s) 136
Alw26I GTCTC 4 cut(s) 26, 541, 614, 753
AlwI GGATC 5 cut(s) 199, 212, 1606, 1679, 2029
AlwNI CAGNNNCTG 1 cut(s) 1453
Ama87I CYCGRG 2 cut(s) 816, 1653
AoxI GGCC 5 cut(s) 649, 951, 994, 1117, 1540
ApeKI GCWGC 4 cut(s) 74, 458, 972, 1459
ApoI RAATTY 4 cut(s) 1027, 1922, 1975, 2067
ArsI GACNNNNNNTTYG 2 cut(s) 624, 656
Asp700I GAANNNNTTC 1 cut(s) 1415
AspS9I GGNCC 3 cut(s) 516, 1118, 1540
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 4 cut(s) 202, 830, 1033, 1171
AvaI CYCGRG 2 cut(s) 816, 1653
AvaII GGWCC 1 cut(s) 516
AxyI CCTNAGG 1 cut(s) 1750
BaeI ACNNNNGTAYC 2 cut(s) 818, 851
BalI TGGCCA 1 cut(s) 953
BamHI GGATCC 1 cut(s) 204
BarI GAAGNNNNNNTAC 3 cut(s) 35, 774, 806
BbsI GAAGAC 1 cut(s) 1350
BbvI GCAGC 4 cut(s) 61, 445, 959, 1471
BceAI ACGGC 2 cut(s) 330, 1520
BciT130I CCWGG 1 cut(s) 138
BciVI GTATCC 3 cut(s) 474, 1150, 1547
BclI TGATCA 2 cut(s) 721, 1525
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 4 cut(s) 26, 541, 614, 753
BfrI CTTAAG 1 cut(s) 1631
BfuAI ACCTGC 3 cut(s) 80, 1727, 2109
BfuI GTATCC 3 cut(s) 474, 1150, 1547
BisI GCNGC 6 cut(s) 75, 459, 973, 1375, 1460, 2032
BlpI GCTNAGC 2 cut(s) 471, 1744
BlsI GCNGC 6 cut(s) 76, 460, 974, 1376, 1461, 2033
BmcAI AGTACT 1 cut(s) 1971
Bme1390I CCNGG 2 cut(s) 138, 291
Bme18I GGWCC 1 cut(s) 516
BmeT110I CYCGRG 2 cut(s) 816, 1653
BmgBI CACGTC 1 cut(s) 1348
BmgT120I GGNCC 3 cut(s) 516, 1118, 1540
BmiI GGNNCC 6 cut(s) 206, 230, 427, 510, 518, 1930
BmrFI CCNGG 2 cut(s) 138, 291
BmrI ACTGGG 2 cut(s) 515, 1719
BmsI GCATC 5 cut(s) 541, 952, 1130, 1440, 1967
BmuI ACTGGG 2 cut(s) 515, 1719
BpiI GAAGAC 1 cut(s) 1350
Bpu1102I GCTNAGC 2 cut(s) 471, 1744
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 774
BsaBI GATNNNNATC 1 cut(s) 2093
BsaHI GRCGYC 1 cut(s) 1877
BsaI GGTCTC 2 cut(s) 26, 753
BsaJI CCNNGG 7 cut(s) 312, 512, 948, 1182, 1375, 1652, 1667
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 225, 1153, 1633, 1755
Bse1I ACTGG 2 cut(s) 521, 1714
Bse21I CCTNAGG 1 cut(s) 1750
Bse3DI GCAATG 3 cut(s) 1439, 2034, 2060
Bse8I GATNNNNATC 1 cut(s) 2093
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 7 cut(s) 312, 512, 948, 1182, 1375, 1652, 1667
BseGI GGATG 7 cut(s) 168, 967, 988, 1111, 1145, 1193, 1888
BseJI GATNNNNATC 1 cut(s) 2093
BseLI CCNNNNNNNGG 5 cut(s) 137, 225, 1153, 1633, 1755
BseMI GCAATG 3 cut(s) 1439, 2034, 2060
BseMII CTCAG 5 cut(s) 171, 281, 453, 1290, 1758
BseNI ACTGG 2 cut(s) 521, 1714
BseXI GCAGC 4 cut(s) 61, 445, 959, 1471
BsgI GTGCAG 1 cut(s) 1478
Bsh1236I CGCG 1 cut(s) 1377
Bsh1285I CGRYCG 1 cut(s) 674
BshFI GGCC 5 cut(s) 651, 953, 996, 1119, 1542
BshVI ATCGAT 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 674
BsiHKCI CYCGRG 2 cut(s) 816, 1653
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 502, 713
BslI CCNNNNNNNGG 5 cut(s) 137, 225, 1153, 1633, 1755
BsmAI GTCTC 4 cut(s) 26, 541, 614, 753
BsmFI GGGAC 2 cut(s) 502, 713
BsmI GAATGC 3 cut(s) 871, 1007, 1517
BsnI GGCC 5 cut(s) 651, 953, 996, 1119, 1542
Bso31I GGTCTC 2 cut(s) 26, 753
BsoBI CYCGRG 2 cut(s) 816, 1653
Bsp1720I GCTNAGC 2 cut(s) 471, 1744
Bsp19I CCATGG 2 cut(s) 948, 1667
BspACI CCGC 4 cut(s) 423, 1375, 1377, 2031
BspANI GGCC 5 cut(s) 651, 953, 996, 1119, 1542
BspCNI CTCAG 5 cut(s) 172, 280, 454, 1291, 1757
BspDI ATCGAT 1 cut(s) 774
BspFNI CGCG 1 cut(s) 1377
BspHI TCATGA 3 cut(s) 348, 724, 1243
BspLI GGNNCC 6 cut(s) 206, 230, 427, 510, 518, 1930
BspMI ACCTGC 3 cut(s) 80, 1727, 2109
BspPI GGATC 5 cut(s) 199, 212, 1606, 1679, 2029
BspTI CTTAAG 1 cut(s) 1631
BspTNI GGTCTC 2 cut(s) 26, 753
BsrDI GCAATG 3 cut(s) 1439, 2034, 2060
BsrI ACTGG 2 cut(s) 521, 1714
BssECI CCNNGG 7 cut(s) 312, 512, 948, 1182, 1375, 1652, 1667
BssNI GRCGYC 1 cut(s) 1877
BssT1I CCWWGG 4 cut(s) 512, 948, 1182, 1667
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 7 cut(s) 358, 503, 834, 926, 1280, 1609, 1944
Bst6I CTCTTC 3 cut(s) 46, 751, 1939
BstACI GRCGYC 1 cut(s) 1877
BstAFI CTTAAG 1 cut(s) 1631
BstAPI GCANNNNNTGC 2 cut(s) 1280, 1964
BstC8I GCNNGC 2 cut(s) 856, 1098
BstDEI CTNAG 9 cut(s) 180, 267, 462, 471, 1299, 1420, 1744, 1750, 2126
BstDSI CCRYGG 4 cut(s) 312, 948, 1375, 1667
BstENI CCTNNNNNAGG 1 cut(s) 1631
BstF5I GGATG 7 cut(s) 168, 967, 988, 1111, 1145, 1193, 1888
BstFNI CGCG 1 cut(s) 1377
BstMAI GTCTC 4 cut(s) 26, 541, 614, 753
BstMCI CGRYCG 1 cut(s) 674
BstMWI GCNNNNNNNGC 7 cut(s) 467, 551, 1280, 1450, 1459, 1504, 1964
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 3 cut(s) 934, 1100, 2202
BstSCI CCNGG 2 cut(s) 136, 289
BstUI CGCG 1 cut(s) 1377
BstV1I GCAGC 4 cut(s) 61, 445, 959, 1471
BstV2I GAAGAC 1 cut(s) 1350
BstX2I RGATCY 1 cut(s) 204
BstXI CCANNNNNNTGG 1 cut(s) 1550
BstYI RGATCY 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 774
Bsu36I CCTNAGG 1 cut(s) 1750
BsuI GTATCC 3 cut(s) 474, 1150, 1547
BsuRI GGCC 5 cut(s) 651, 953, 996, 1119, 1542
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 4 cut(s) 312, 948, 1375, 1667
BtrI CACGTC 1 cut(s) 1348
BtsCI GGATG 7 cut(s) 168, 967, 988, 1111, 1145, 1193, 1888
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 6 cut(s) 482, 508, 1296, 1614, 1707, 1940
BveI ACCTGC 3 cut(s) 80, 1727, 2109
Cac8I GCNNGC 2 cut(s) 856, 1098
CaiI CAGNNNCTG 1 cut(s) 1453
CciI TCATGA 3 cut(s) 348, 724, 1243
Cfr13I GGNCC 3 cut(s) 516, 1118, 1540
Cfr42I CCGCGG 1 cut(s) 1378
ClaI ATCGAT 1 cut(s) 774
Csp6I GTAC 7 cut(s) 668, 791, 1393, 1705, 1831, 1970, 2110
CspCI CAANNNNNGTGG 2 cut(s) 1757, 1792
CviQI GTAC 7 cut(s) 668, 791, 1393, 1705, 1831, 1970, 2110
DdeI CTNAG 9 cut(s) 180, 267, 462, 471, 1299, 1420, 1744, 1750, 2126
DraIII CACNNNGTG 1 cut(s) 1302
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 1 cut(s) 951
Eam1104I CTCTTC 3 cut(s) 46, 751, 1939
EarI CTCTTC 3 cut(s) 46, 751, 1939
Eco130I CCWWGG 4 cut(s) 512, 948, 1182, 1667
Eco31I GGTCTC 2 cut(s) 26, 753
Eco47I GGWCC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 1430
Eco81I CCTNAGG 1 cut(s) 1750
Eco88I CYCGRG 2 cut(s) 816, 1653
EcoNI CCTNNNNNAGG 1 cut(s) 1631
EcoO109I RGGNCCY 1 cut(s) 516
EcoRI GAATTC 1 cut(s) 1922
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 4 cut(s) 512, 948, 1182, 1667
EcoT22I ATGCAT 1 cut(s) 871
ErhI CCWWGG 4 cut(s) 512, 948, 1182, 1667
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 2 cut(s) 502, 713
FauNDI CATATG 2 cut(s) 1561, 1687
FbaI TGATCA 2 cut(s) 721, 1525
FblI GTMKAC 1 cut(s) 921
Fnu4HI GCNGC 6 cut(s) 75, 459, 973, 1375, 1460, 2032
FokI GGATG 7 cut(s) 175, 974, 995, 1118, 1152, 1200, 1895
Fsp4HI GCNGC 6 cut(s) 75, 459, 973, 1375, 1460, 2032
GluI GCNGC 6 cut(s) 75, 459, 973, 1375, 1460, 2032
HaeIII GGCC 5 cut(s) 651, 953, 996, 1119, 1542
HapII CCGG 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 1877
HindIII AAGCTT 1 cut(s) 1413
HinfI GANTC 7 cut(s) 54, 121, 701, 1259, 1850, 1892, 2089
HpaII CCGG 1 cut(s) 290
HphI GGTGA 4 cut(s) 202, 830, 1033, 1171
Hpy166II GTNNAC 7 cut(s) 298, 922, 1179, 1353, 1393, 1707, 2047
Hpy188III TCNNGA 6 cut(s) 349, 659, 725, 818, 1244, 1489
Hpy8I GTNNAC 7 cut(s) 298, 922, 1179, 1353, 1393, 1707, 2047
Hpy99I CGWCG 1 cut(s) 1882
HpyCH4III ACNGT 7 cut(s) 358, 503, 834, 926, 1280, 1609, 1944
HpyCH4IV ACGT 4 cut(s) 718, 1128, 1347, 1877
HpyF10VI GCNNNNNNNGC 7 cut(s) 467, 551, 1280, 1450, 1459, 1504, 1964
HpyF3I CTNAG 9 cut(s) 180, 267, 462, 471, 1299, 1420, 1744, 1750, 2126
HpySE526I ACGT 4 cut(s) 718, 1128, 1347, 1877
Hsp92I GRCGYC 1 cut(s) 1877
Ksp22I TGATCA 2 cut(s) 721, 1525
KspI CCGCGG 1 cut(s) 1378
LmnI GCTCC 6 cut(s) 508, 1435, 1713, 1802, 1928, 2159
Lsp1109I GCAGC 4 cut(s) 61, 445, 959, 1471
LweI GCATC 5 cut(s) 541, 952, 1130, 1440, 1967
MaeII ACGT 4 cut(s) 718, 1128, 1347, 1877
MaeIII GTNAC 4 cut(s) 122, 307, 926, 1196
MfeI CAATTG 1 cut(s) 1338
MflI RGATCY 1 cut(s) 204
MlsI TGGCCA 1 cut(s) 953
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 4 cut(s) 63, 130, 695, 1901
MmeI TCCRAC 5 cut(s) 1111, 1361, 1455, 1457, 1860
MnlI CCTC 7 cut(s) 218, 448, 1049, 1078, 1637, 1662, 1942
Mox20I TGGCCA 1 cut(s) 953
Mph1103I ATGCAT 1 cut(s) 871
MroXI GAANNNNTTC 1 cut(s) 1415
MscI TGGCCA 1 cut(s) 953
MseI TTAA 4 cut(s) 597, 977, 1632, 2195
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 1 cut(s) 1377
MspCI CTTAAG 1 cut(s) 1631
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 138, 291
MunI CAATTG 1 cut(s) 1338
Mva1269I GAATGC 3 cut(s) 871, 1007, 1517
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 1377
MwoI GCNNNNNNNGC 7 cut(s) 467, 551, 1280, 1450, 1459, 1504, 1964
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 2 cut(s) 948, 1667
NdeI CATATG 2 cut(s) 1561, 1687
NlaIV GGNNCC 6 cut(s) 206, 230, 427, 510, 518, 1930
NmuCI GTSAC 4 cut(s) 122, 307, 926, 1196
NsiI ATGCAT 1 cut(s) 871
NspI RCATGY 3 cut(s) 934, 1100, 2202
PaeI GCATGC 1 cut(s) 1100
PagI TCATGA 3 cut(s) 348, 724, 1243
PaqCI CACCTGC 1 cut(s) 1727
PciI ACATGT 2 cut(s) 930, 2198
PctI GAATGC 3 cut(s) 871, 1007, 1517
PdmI GAANNNNTTC 1 cut(s) 1415
PfeI GAWTC 3 cut(s) 1259, 1850, 2089
PkrI GCNGC 6 cut(s) 76, 460, 974, 1376, 1461, 2033
Ple19I CGATCG 1 cut(s) 674
PleI GAGTC 4 cut(s) 62, 129, 695, 1900
PpsI GAGTC 4 cut(s) 62, 129, 695, 1900
PpuMI RGGWCCY 1 cut(s) 516
PscI ACATGT 2 cut(s) 930, 2198
Psp5II RGGWCCY 1 cut(s) 516
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 6 cut(s) 206, 230, 427, 510, 518, 1930
PspPI GGNCC 3 cut(s) 516, 1118, 1540
PspPPI RGGWCCY 1 cut(s) 516
PstNI CAGNNNCTG 1 cut(s) 1453
PsuI RGATCY 1 cut(s) 204
PvuI CGATCG 1 cut(s) 674
RsaI GTAC 7 cut(s) 669, 792, 1394, 1706, 1832, 1971, 2111
RsaNI GTAC 7 cut(s) 668, 791, 1393, 1705, 1831, 1970, 2110
RseI CAYNNNNRTG 1 cut(s) 305
SacII CCGCGG 1 cut(s) 1378
SaqAI TTAA 4 cut(s) 597, 977, 1632, 2195
SatI GCNGC 6 cut(s) 75, 459, 973, 1375, 1460, 2032
Sau96I GGNCC 3 cut(s) 516, 1118, 1540
ScaI AGTACT 1 cut(s) 1971
SchI GAGTC 4 cut(s) 63, 130, 695, 1901
ScrFI CCNGG 2 cut(s) 138, 291
SfaNI GCATC 5 cut(s) 541, 952, 1130, 1440, 1967
Sfr303I CCGCGG 1 cut(s) 1378
SgrBI CCGCGG 1 cut(s) 1378
SinI GGWCC 1 cut(s) 516
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 1631
SmoI CTYRAG 1 cut(s) 1631
SphI GCATGC 1 cut(s) 1100
SsiI CCGC 4 cut(s) 423, 1375, 1377, 2031
SspI AATATT 1 cut(s) 892
StyD4I CCNGG 2 cut(s) 136, 289
StyI CCWWGG 4 cut(s) 512, 948, 1182, 1667
TaaI ACNGT 7 cut(s) 358, 503, 834, 926, 1280, 1609, 1944
TaiI ACGT 4 cut(s) 721, 1131, 1350, 1880
TaqI TCGA 5 cut(s) 630, 674, 774, 1818, 2171
TatI WGTACW 4 cut(s) 790, 1392, 1704, 1969
TauI GCSGC 2 cut(s) 1377, 2034
TfiI GAWTC 3 cut(s) 1259, 1850, 2089
Tru1I TTAA 4 cut(s) 597, 977, 1632, 2195
Tru9I TTAA 4 cut(s) 597, 977, 1632, 2195
TscAI CASTG 6 cut(s) 482, 508, 1303, 1614, 1714, 1947
TseFI GTSAC 4 cut(s) 122, 307, 926, 1196
TseI GCWGC 4 cut(s) 74, 458, 972, 1459
Tsp45I GTSAC 4 cut(s) 122, 307, 926, 1196
TspGWI ACGGA 1 cut(s) 1939
TspRI CASTG 6 cut(s) 482, 508, 1303, 1614, 1714, 1947
Vha464I CTTAAG 1 cut(s) 1631
VpaK11BI GGWCC 1 cut(s) 516
XagI CCTNNNNNAGG 1 cut(s) 1631
XapI RAATTY 4 cut(s) 1027, 1922, 1975, 2067
XceI RCATGY 3 cut(s) 934, 1100, 2202
XmiI GTMKAC 1 cut(s) 921
XmnI GAANNNNTTC 1 cut(s) 1415
ZraI GACGTC 1 cut(s) 1878
ZrmI AGTACT 1 cut(s) 1971
Zsp2I ATGCAT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.