Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007021.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

8824 .. 9691

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007021.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgggagaggaaagatatttaccactatttgagacaacgaaggcaaagggaaaagtcctctataggttttctgcagtgtctgtatctgttggtatatgtttgatttgggtttatagaatgactcatataccaaaagctggagaagatggaagatttggttggatgttgttgttcgccgctgagttatggttcgctttttactggttcgtcactcaagcccttcggtggtgccgcatcaaccggcaaaccttcaaggacaggctctctgaaagatatgagaatgagttgccgggggtggacatattcgtgtgcacagcggatcccatcatagagccgccgattatggtgatgaacactgttctgtcggttatggcttatgactatccggcggagaagctcagcgtgtatctttctgacgatggcggctcagagtttacgtactatgcttttttggaagctgctgagtttgccaagcattggataccctattgcaagaagtacagtgtggagccaagatcacccgccgcttattttgtctcaacagcttctgatgatcaaagtcagaatcagaaacagaccagggatttagctgtaattaaggtaattattatttatcttatcattaatccttccataatccgacgcactttgattgctcggcgaggacttttaactttaagaagagcggaaagtatgacgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

234

Amino Acids

27.13

Weight (kDa)

8.79

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AccB7I	CCANNNNNTGG	2 cut(s)	137, 477
AccBSI	CCGCTC	1 cut(s)	686
AciI	CCGC	9 cut(s)	177, 232, 317, 335, 389, 423, 522, 525, 686
AclWI	GGATC	2 cut(s)	314, 327
AfaI	GTAC	2 cut(s)	440, 500
AfiI	CCNNNNNNNGG	3 cut(s)	137, 225, 477
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	578
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	5 cut(s)	137, 397, 458, 545, 590
AluI	AGCT	5 cut(s)	137, 397, 458, 545, 590
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	26, 541
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	314, 327
AlwNI	CAGNNNCTG	2 cut(s)	80, 548
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	624
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	358, 510
BaeGI	GKGCMC	1 cut(s)	314
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	3 cut(s)	140, 332, 413
BciT130I	CCWGG	1 cut(s)	580
BciVI	GTATCC	1 cut(s)	474
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	26, 541
BfmI	CTRYAG	2 cut(s)	61, 72
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	6 cut(s)	177, 232, 335, 424, 459, 525
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	6 cut(s)	178, 233, 336, 425, 460, 526
Bme1390I	CCNGG	2 cut(s)	291, 580
BmiI	GGNNCC	3 cut(s)	230, 321, 510
BmrFI	CCNGG	2 cut(s)	291, 580
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	290, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 225, 477
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	580
BseDI	CCNNGG	2 cut(s)	290, 579
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	3 cut(s)	137, 225, 477
BseMII	CTCAG	4 cut(s)	171, 412, 441, 453
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	3 cut(s)	241, 290, 386
BslI	CCNNNNNNNGG	3 cut(s)	137, 225, 477
BsmAI	GTCTC	2 cut(s)	26, 541
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	319, 515, 553
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	9 cut(s)	177, 232, 317, 335, 389, 423, 522, 525, 686
BspCNI	CTCAG	4 cut(s)	172, 411, 440, 454
BspLI	GGNNCC	3 cut(s)	230, 321, 510
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	2 cut(s)	314, 327
BspQI	GCTCTTC	1 cut(s)	676
BspT107I	GGYRCC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	686
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	290, 579
BssMI	GATC	3 cut(s)	319, 515, 553
Bst2UI	CCWGG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	358, 503
Bst6I	CTCTTC	1 cut(s)	676
BstBAI	YACGTR	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	180, 398, 427, 462
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	322, 518, 556
BstMAI	GTCTC	2 cut(s)	26, 541
BstMBI	GATC	3 cut(s)	319, 515, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	1 cut(s)	580
BstSCI	CCNGG	2 cut(s)	289, 578
BstSFI	CTRYAG	2 cut(s)	61, 72
BstSLI	GKGCMC	1 cut(s)	314
BstSNI	TACGTA	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	81, 354, 508
CaiI	CAGNNNCTG	2 cut(s)	80, 548
Cfr10I	RCCGGY	1 cut(s)	240
CseI	GACGC	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	439, 499
CviQI	GTAC	2 cut(s)	439, 499
DdeI	CTNAG	4 cut(s)	180, 398, 427, 462
DpnI	GATC	3 cut(s)	321, 517, 555
DpnII	GATC	3 cut(s)	319, 515, 553
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	404
Eco105I	TACGTA	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	578
FauI	CCCGC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	6 cut(s)	177, 232, 335, 424, 459, 525
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	6 cut(s)	177, 232, 335, 424, 459, 525
GluI	GCNGC	6 cut(s)	177, 232, 335, 424, 459, 525
GsuI	CTGGAG	1 cut(s)	159
HapII	CCGG	3 cut(s)	241, 290, 386
HgaI	GACGC	1 cut(s)	651
HinfI	GANTC	2 cut(s)	121, 565
HpaII	CCGG	3 cut(s)	241, 290, 386
HphI	GGTGA	2 cut(s)	358, 510
Hpy166II	GTNNAC	3 cut(s)	298, 312, 435
Hpy188I	TCNGA	7 cut(s)	268, 415, 430, 550, 564, 570, 641
Hpy8I	GTNNAC	3 cut(s)	298, 312, 435
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	4 cut(s)	34, 230, 259, 639
HpyCH4III	ACNGT	2 cut(s)	358, 503
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	74, 312, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	4 cut(s)	180, 398, 427, 462
HpySE526I	ACGT	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	319, 515, 553
LguI	GCTCTTC	1 cut(s)	676
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	8 cut(s)	123, 187, 244, 254, 303, 399, 565, 592
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	243
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	321, 517, 555
MbiI	CCGCTC	1 cut(s)	686
MboI	GATC	3 cut(s)	319, 515, 553
MboII	GAAGA	3 cut(s)	155, 162, 693
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	2 cut(s)	594, 603
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	2 cut(s)	140, 664
MnlI	CCTC	2 cut(s)	68, 656
MseI	TTAA	4 cut(s)	597, 624, 671, 677
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	179, 317
MspI	CCGG	3 cut(s)	241, 290, 386
MspR9I	CCNGG	2 cut(s)	291, 580
MvaI	CCWGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	1 cut(s)	467
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	319, 515, 553
NlaIV	GGNNCC	3 cut(s)	230, 321, 510
NmeAIII	GCCGAG	1 cut(s)	637
NmuCI	GTSAC	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	2 cut(s)	137, 477
PkrI	GCNGC	6 cut(s)	178, 233, 336, 425, 460, 526
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	438
PshBI	ATTAAT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	578
PspN4I	GGNNCC	3 cut(s)	230, 321, 510
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	2 cut(s)	80, 548
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	440, 500
RsaNI	GTAC	2 cut(s)	439, 499
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	676
SaqAI	TTAA	4 cut(s)	597, 624, 671, 677
SatI	GCNGC	6 cut(s)	177, 232, 335, 424, 459, 525
Sau3AI	GATC	3 cut(s)	319, 515, 553
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	291, 580
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	9 cut(s)	68, 139, 251, 399, 440, 460, 547, 592, 603
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	2 cut(s)	61, 72
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SnaBI	TACGTA	1 cut(s)	438
Sse9I	AATT	2 cut(s)	594, 603
SsiI	CCGC	9 cut(s)	177, 232, 317, 335, 389, 423, 522, 525, 686
StyD4I	CCNGG	2 cut(s)	289, 578
TaaI	ACNGT	2 cut(s)	358, 503
TaiI	ACGT	1 cut(s)	440
TasI	AATT	2 cut(s)	594, 603
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	5 cut(s)	179, 234, 337, 426, 527
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	4 cut(s)	597, 624, 671, 677
Tru9I	TTAA	4 cut(s)	597, 624, 671, 677
TscAI	CASTG	3 cut(s)	81, 361, 508
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	81, 361, 508
Van91I	CCANNNNNTGG	2 cut(s)	137, 477
VneI	GTGCAC	1 cut(s)	310
VspI	ATTAAT	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.