Rmu_co8325177.1_g000001

Belongs to the glycosyltransferase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8325177.1
OG0000273
Physical Location & Seq
Forward (+)
68 .. 814
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8325177.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
atgtctgtgatttgtgaattctggtttgccttctcttggatacttgatcagcttccaaagctgtgccccataaatcgcattgcttatgttgatgttttaaaggagaagtttgaaactccaaatccaagcaatcctactggaaaatctgatcttccaggaatagacatttttgtatctacagcagatccagagaaagaacctcctcttgtaactgcaaacacgattctctcgatacttgcaactgactaccctgttgagaagcttgcctgttatgtttctgatgatggaggtgcacttttgacctttgaggccatggcagaagctgctagttttgccaacttgtgggtaccattttgtcggaagcatgatattgagccaaggaacccagaatcttacttcagcatgaagagagatccttacaagaataaagtaaagtccgattttgtaagggatcgcaggcaggtaaagcgagagtatgatgaatttaaggttaggattaatggccttcctgattcaatccggagacgttccgatgcctttaatgctagagaggagatcaaagctatgaaacttcggagagagactagagatgatgaaccactggaaaatttaaagttcccaaaagcaacttggatgactgatggaacacaatggcctggtacttgggtagtttctgcccctgagcattccaagggtgaccatgccagtatcatacaggtatgcatcatattatttcatataatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulose_synt zf-RING_4

Protein Analysis

248

Amino Acids

28.5

Weight (kDa)

5.9

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55850
fragaria_vesca FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 451
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 342
AccIII TCCGGA 1 cut(s) 519
AclWI GGATC 3 cut(s) 179, 407, 459
AcsI RAATTY 3 cut(s) 17, 482, 607
AcuI CTGAAG 1 cut(s) 382
AfaI GTAC 2 cut(s) 348, 661
AfiI CCNNNNNNNGG 2 cut(s) 36, 342
AgsI TTSAA 2 cut(s) 113, 516
AjnI CCWGG 2 cut(s) 154, 655
AluBI AGCT 5 cut(s) 52, 61, 262, 323, 563
AluI AGCT 5 cut(s) 52, 61, 262, 323, 563
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 517, 575
Alw44I GTGCAC 1 cut(s) 291
AlwI GGATC 3 cut(s) 179, 407, 459
AlwNI CAGNNNCTG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 519
AoxI GGCC 3 cut(s) 309, 502, 653
ApaLI GTGCAC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 17, 482, 607
AseI ATTAAT 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 707
BaeGI GKGCMC 2 cut(s) 68, 295
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BanI GGYRCC 1 cut(s) 346
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 278, 635
BciT130I CCWGG 2 cut(s) 156, 657
BciVI GTATCC 1 cut(s) 33
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 517, 575
BfaI CTAG 3 cut(s) 327, 546, 585
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 451
BfuI GTATCC 1 cut(s) 33
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 156, 657
BmiI GGNNCC 2 cut(s) 348, 383
BmrFI CCNGG 2 cut(s) 156, 657
BmsI GCATC 2 cut(s) 523, 732
Bpu10I CCTNAGC 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 312, 377, 690
BsaWI WCCGGW 1 cut(s) 519
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 342
Bse1I ACTGG 3 cut(s) 142, 606, 705
Bse3DI GCAATG 1 cut(s) 78
BseAI TCCGGA 1 cut(s) 519
BseBI CCWGG 2 cut(s) 156, 657
BseDI CCNNGG 3 cut(s) 312, 377, 690
BseGI GGATG 1 cut(s) 639
BseLI CCNNNNNNNGG 2 cut(s) 36, 342
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 142, 606, 705
BseRI GAGGAG 2 cut(s) 192, 566
BseSI GKGCMC 2 cut(s) 68, 295
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 3 cut(s) 311, 504, 655
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 295
BsiSI CCGG 1 cut(s) 520
BslI CCNNNNNNNGG 2 cut(s) 36, 342
BsmAI GTCTC 2 cut(s) 517, 575
BsmBI CGTCTC 1 cut(s) 517
BsmI GAATGC 1 cut(s) 685
BsnI GGCC 3 cut(s) 311, 504, 655
Bsp1286I GDGCHC 2 cut(s) 68, 295
Bsp13I TCCGGA 1 cut(s) 519
Bsp143I GATC 6 cut(s) 46, 148, 184, 412, 451, 555
Bsp19I CCATGG 1 cut(s) 312
BspANI GGCC 3 cut(s) 311, 504, 655
BspCNI CTCAG 1 cut(s) 673
BspEI TCCGGA 1 cut(s) 519
BspLI GGNNCC 2 cut(s) 348, 383
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 3 cut(s) 179, 407, 459
BspT107I GGYRCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 78
BsrI ACTGG 3 cut(s) 142, 606, 705
BssECI CCNNGG 3 cut(s) 312, 377, 690
BssMI GATC 6 cut(s) 46, 148, 184, 412, 451, 555
BssT1I CCWWGG 3 cut(s) 312, 377, 690
Bst2UI CCWGG 2 cut(s) 156, 657
Bst6I CTCTTC 1 cut(s) 401
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 264, 458
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 695
BstF5I GGATG 1 cut(s) 639
BstKTI GATC 6 cut(s) 49, 151, 187, 415, 454, 558
BstMAI GTCTC 2 cut(s) 517, 575
BstMBI GATC 6 cut(s) 46, 148, 184, 412, 451, 555
BstMWI GCNNNNNNNGC 5 cut(s) 58, 323, 332, 466, 542
BstNI CCWGG 2 cut(s) 156, 657
BstPI GGTNACC 1 cut(s) 695
BstSCI CCNGG 2 cut(s) 154, 655
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 2 cut(s) 68, 295
BstV1I GCAGC 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 184, 412
BstYI RGATCY 2 cut(s) 184, 412
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 311, 504, 655
BtgI CCRYGG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 639
BtsIMutI CAGTG 1 cut(s) 599
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 2 cut(s) 264, 458
CaiI CAGNNNCTG 1 cut(s) 323
Csp6I GTAC 2 cut(s) 347, 660
CviAII CATG 4 cut(s) 313, 365, 403, 701
CviJI RGCY 9 cut(s) 52, 61, 262, 311, 323, 376, 504, 563, 655
CviKI_1 RGCY 9 cut(s) 52, 61, 262, 311, 323, 376, 504, 563, 655
CviQI GTAC 2 cut(s) 347, 660
DdeI CTNAG 1 cut(s) 681
DpnI GATC 6 cut(s) 48, 150, 186, 414, 453, 557
DpnII GATC 6 cut(s) 46, 148, 184, 412, 451, 555
DraI TTTAAA 2 cut(s) 99, 612
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco130I CCWWGG 3 cut(s) 312, 377, 690
Eco57I CTGAAG 1 cut(s) 382
Eco91I GGTNACC 1 cut(s) 695
EcoO65I GGTNACC 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 154, 655
EcoT14I CCWWGG 3 cut(s) 312, 377, 690
EcoT22I ATGCAT 1 cut(s) 725
ErhI CCWWGG 3 cut(s) 312, 377, 690
Esp3I CGTCTC 1 cut(s) 517
FaeI CATG 4 cut(s) 316, 368, 406, 704
FatI CATG 4 cut(s) 312, 364, 402, 700
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 3 cut(s) 327, 546, 585
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 3 cut(s) 311, 504, 655
HapII CCGG 1 cut(s) 520
Hin1II CATG 4 cut(s) 316, 368, 406, 704
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 223, 389, 512
HpaII CCGG 1 cut(s) 520
HphI GGTGA 1 cut(s) 707
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 6 cut(s) 148, 280, 360, 439, 532, 576
Hpy188III TCNNGA 4 cut(s) 188, 229, 509, 520
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 40, 515
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 4 cut(s) 215, 239, 293, 723
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 323, 332, 466, 542
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 4 cut(s) 316, 368, 406, 704
Kpn2I TCCGGA 1 cut(s) 519
KpnI GGTACC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 6 cut(s) 46, 148, 184, 412, 451, 555
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 523, 732
MaeI CTAG 3 cut(s) 327, 546, 585
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 208, 695
MalI GATC 6 cut(s) 48, 150, 186, 414, 453, 557
MboI GATC 6 cut(s) 46, 148, 184, 412, 451, 555
MboII GAAGA 2 cut(s) 143, 418
MflI RGATCY 2 cut(s) 184, 412
MhlI GDGCHC 2 cut(s) 68, 295
MluCI AATT 4 cut(s) 17, 482, 607, 741
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 5 cut(s) 210, 213, 281, 301, 544
Mph1103I ATGCAT 1 cut(s) 725
MroI TCCGGA 1 cut(s) 519
MseI TTAA 6 cut(s) 98, 486, 498, 540, 611, 745
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 2 cut(s) 156, 657
Mva1269I GAATGC 1 cut(s) 685
MvaI CCWGG 2 cut(s) 156, 657
MwoI GCNNNNNNNGC 5 cut(s) 58, 323, 332, 466, 542
NcoI CCATGG 1 cut(s) 312
NdeII GATC 6 cut(s) 46, 148, 184, 412, 451, 555
NlaIII CATG 4 cut(s) 316, 368, 406, 704
NlaIV GGNNCC 2 cut(s) 348, 383
NmuCI GTSAC 1 cut(s) 695
NsiI ATGCAT 1 cut(s) 725
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PctI GAATGC 1 cut(s) 685
PfeI GAWTC 3 cut(s) 223, 389, 512
PflMI CCANNNNNTGG 1 cut(s) 342
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 1 cut(s) 325
PshBI ATTAAT 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 154, 655
PspEI GGTNACC 1 cut(s) 695
PspGI CCWGG 2 cut(s) 154, 655
PspN4I GGNNCC 2 cut(s) 348, 383
PstNI CAGNNNCTG 1 cut(s) 323
PsuI RGATCY 2 cut(s) 184, 412
RsaI GTAC 2 cut(s) 348, 661
RsaNI GTAC 2 cut(s) 347, 660
SaqAI TTAA 6 cut(s) 98, 486, 498, 540, 611, 745
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 6 cut(s) 46, 148, 184, 412, 451, 555
ScrFI CCNGG 2 cut(s) 156, 657
SduI GDGCHC 2 cut(s) 68, 295
SfaNI GCATC 2 cut(s) 523, 732
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 4 cut(s) 17, 482, 607, 741
SspMI CTAG 3 cut(s) 327, 546, 585
StyD4I CCNGG 2 cut(s) 154, 655
StyI CCWWGG 3 cut(s) 312, 377, 690
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 230
TasI AATT 4 cut(s) 17, 482, 607, 741
TfiI GAWTC 3 cut(s) 223, 389, 512
Tru1I TTAA 6 cut(s) 98, 486, 498, 540, 611, 745
Tru9I TTAA 6 cut(s) 98, 486, 498, 540, 611, 745
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 419, 495, 581, 609, 725
TspRI CASTG 1 cut(s) 606
Van91I CCANNNNNTGG 1 cut(s) 342
VneI GTGCAC 1 cut(s) 291
VspI ATTAAT 1 cut(s) 498
XapI RAATTY 3 cut(s) 17, 482, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XspI CTAG 3 cut(s) 327, 546, 585
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.