Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

82703131 .. 82703986

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGGTGTGGAGGCACAATGTTAGGTTGGTGGAACGACCAACGTATATGGCTTTACCAGAGAATAACCTCATACCTATTTGCCTTCATCGACACCATTGTACACTACCTTGGATACACAGATTCAGCATTTGTAATAACAGCCAAGGTGGCCGATGCAGATGTGTCCGAACGGTATAAGAAAGAGATCATGGAATTTGGCGGATCGTGTCCAATGTTTACCATACTGGCAACACTAGCATTGCTCAACTTGTACTGCTTTGCCGGGTTTGTGCAGGCAGCAGTCGCTGGAACAATTGGCTTTGCAGAAGTTTATGAGACAATGTGCTTGCAGATTCTTCTATGTGGGGTTTTGATTGTCATTAACCTACCGTTGTACGAAGCCCTATACCTAAGGAAGGACAAGGGGAAGCTGCCAAGCTCTGTAGCAGTTAAGTCAATGGCATTTGCTGGATTTGCTTGTATATGTTCTAAATTTATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

6.54

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	194, 473
AfaI	GTAC	3 cut(s)	102, 254, 377
AfiI	CCNNNNNNNGG	1 cut(s)	397
AluBI	AGCT	2 cut(s)	412, 420
AluI	AGCT	2 cut(s)	412, 420
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	278, 412
ApoI	RAATTY	2 cut(s)	194, 473
AsuC2I	CCSGG	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	290, 399
BciVI	GTATCC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	423
BfuI	GTATCC	1 cut(s)	107
BglI	GCCNNNNNGGC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	279, 413
BlsI	GCNGC	2 cut(s)	280, 414
Bme1390I	CCNGG	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	2 cut(s)	109, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	109, 144
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	290, 399
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	311
BsnI	GGCC	1 cut(s)	152
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	186, 203
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	109, 144
BssMI	GATC	2 cut(s)	186, 203
BssT1I	CCWWGG	2 cut(s)	109, 144
Bst4CI	ACNGT	2 cut(s)	174, 372
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	276, 329
BstDEI	CTNAG	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	189, 206
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	2 cut(s)	186, 203
BstMWI	GCNNNNNNNGC	4 cut(s)	149, 236, 284, 455
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	290, 399
Bsu36I	CCTNAGG	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	276, 329
CaiI	CAGNNNCTG	1 cut(s)	287
Csp6I	GTAC	3 cut(s)	101, 253, 376
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	7 cut(s)	52, 143, 152, 300, 383, 412, 420
CviKI_1	RGCY	7 cut(s)	52, 143, 152, 300, 383, 412, 420
CviQI	GTAC	3 cut(s)	101, 253, 376
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	2 cut(s)	188, 205
DpnII	GATC	2 cut(s)	186, 203
EaeI	YGGCCR	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	109, 144
Eco81I	CCTNAGG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoT14I	CCWWGG	2 cut(s)	109, 144
ErhI	CCWWGG	2 cut(s)	109, 144
FaeI	CATG	1 cut(s)	193
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	279, 413
Fsp4HI	GCNGC	2 cut(s)	279, 413
FspBI	CTAG	1 cut(s)	236
GluI	GCNGC	2 cut(s)	279, 413
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	1 cut(s)	193
HinfI	GANTC	2 cut(s)	122, 334
HpaII	CCGG	1 cut(s)	264
Hpy166II	GTNNAC	2 cut(s)	103, 219
Hpy188I	TCNGA	1 cut(s)	169
Hpy8I	GTNNAC	2 cut(s)	103, 219
HpyAV	CCTTC	2 cut(s)	94, 391
HpyCH4III	ACNGT	2 cut(s)	174, 372
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	4 cut(s)	158, 274, 305, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	149, 236, 284, 455
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	186, 203
LpnPI	CCDG	6 cut(s)	71, 212, 260, 273, 277, 435
Lsp1109I	GCAGC	2 cut(s)	290, 399
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	43
MalI	GATC	2 cut(s)	188, 205
MboI	GATC	2 cut(s)	186, 203
MboII	GAAGA	1 cut(s)	329
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	3 cut(s)	194, 294, 473
MnlI	CCTC	2 cut(s)	5, 79
MseI	TTAA	2 cut(s)	363, 432
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	149, 236, 284, 455
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	2 cut(s)	186, 203
NlaIII	CATG	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	122, 334
PkrI	GCNGC	2 cut(s)	280, 414
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	3 cut(s)	102, 254, 377
RsaNI	GTAC	3 cut(s)	101, 253, 376
SaqAI	TTAA	2 cut(s)	363, 432
SatI	GCNGC	2 cut(s)	279, 413
Sau3AI	GATC	2 cut(s)	186, 203
ScrFI	CCNGG	1 cut(s)	265
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	194, 294, 473
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	109, 144
TaaI	ACNGT	2 cut(s)	174, 372
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	90
TasI	AATT	3 cut(s)	194, 294, 473
TatI	WGTACW	2 cut(s)	100, 252
TfiI	GAWTC	2 cut(s)	122, 334
Tru1I	TTAA	2 cut(s)	363, 432
Tru9I	TTAA	2 cut(s)	363, 432
TseI	GCWGC	2 cut(s)	278, 412
TspDTI	ATGAA	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	194, 473
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.