Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

62172994 .. 62173584

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0449200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCTTCGCAGGAAGAGCAGTACTAGGTGGATTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAAAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGTTACGGCAAGATCGAGTTCAAGAATGTCTATTATTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTGCTTCTTCCGCTAGTGTGATAATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTTAGCTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGATGAGGACATCTTTGGCAACATGAAGACTACTTCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

196

Amino Acids

22.34

Weight (kDa)

8.71

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	8 - 68	2.9e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	2 cut(s)	97, 331
AciI	CCGC	2 cut(s)	339, 384
AclWI	GGATC	5 cut(s)	125, 300, 319, 387, 400
AfaI	GTAC	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	157, 429, 524
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	3 cut(s)	67, 130, 437
AluI	AGCT	3 cut(s)	67, 130, 437
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	5 cut(s)	125, 300, 319, 387, 400
Ama87I	CYCGRG	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	2 cut(s)	272, 503
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	581
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	157
BciT130I	CCWGG	1 cut(s)	515
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	4 cut(s)	24, 342, 417, 450
BfmI	CTRYAG	1 cut(s)	39
BfuAI	ACCTGC	2 cut(s)	97, 331
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	92, 394
BmrFI	CCNGG	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	110, 459
BpuEI	CTTGAG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	515
BseGI	GGATG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	193, 237
Bsp143I	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
BspACI	CCGC	2 cut(s)	339, 384
BspLI	GGNNCC	2 cut(s)	92, 394
BspMI	ACCTGC	2 cut(s)	97, 331
BspPI	GGATC	5 cut(s)	125, 300, 319, 387, 400
BspQI	GCTCTTC	1 cut(s)	8
BssMI	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	8, 404
BstDEI	CTNAG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	8 cut(s)	46, 120, 150, 248, 295, 314, 395, 511
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 338
BstNI	CCWGG	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	3 cut(s)	117, 311, 392
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	3 cut(s)	117, 311, 392
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	533
BveI	ACCTGC	2 cut(s)	97, 331
Cfr13I	GGNCC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	9 cut(s)	230, 238, 287, 397, 403, 469, 490, 548, 571
CviJI	RGCY	5 cut(s)	67, 130, 191, 253, 437
CviKI_1	RGCY	5 cut(s)	67, 130, 191, 253, 437
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	8 cut(s)	45, 119, 149, 247, 294, 313, 394, 510
DpnII	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
Eam1104I	CTCTTC	2 cut(s)	8, 404
EarI	CTCTTC	2 cut(s)	8, 404
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	9 cut(s)	233, 241, 290, 400, 406, 472, 493, 551, 574
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	9 cut(s)	229, 237, 286, 396, 402, 468, 489, 547, 570
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	193
FspBI	CTAG	4 cut(s)	24, 342, 417, 450
GsuI	CTGGAG	2 cut(s)	110, 459
Hin1II	CATG	9 cut(s)	233, 241, 290, 400, 406, 472, 493, 551, 574
HinfI	GANTC	2 cut(s)	31, 54
HphI	GGTGA	2 cut(s)	272, 503
Hpy166II	GTNNAC	2 cut(s)	181, 216
Hpy188I	TCNGA	3 cut(s)	114, 223, 586
Hpy188III	TCNNGA	3 cut(s)	157, 178, 194
Hpy8I	GTNNAC	2 cut(s)	181, 216
HpyCH4III	ACNGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	241, 320, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 338
HpyF3I	CTNAG	1 cut(s)	433
Hsp92II	CATG	9 cut(s)	233, 241, 290, 400, 406, 472, 493, 551, 574
Kzo9I	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	92, 140, 234, 336, 423, 500, 527
MaeI	CTAG	4 cut(s)	24, 342, 417, 450
MaeIII	GTNAC	2 cut(s)	137, 271
MalI	GATC	8 cut(s)	45, 119, 149, 247, 294, 313, 394, 510
MboI	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
MboII	GAAGA	8 cut(s)	25, 217, 220, 306, 327, 421, 518, 586
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	3 cut(s)	117, 311, 392
MhlI	GDGCHC	2 cut(s)	193, 237
MluCI	AATT	2 cut(s)	277, 351
MnlI	CCTC	6 cut(s)	68, 108, 283, 434, 494, 547
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	2 cut(s)	303, 360
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	515
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	2 cut(s)	15, 338
NdeII	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
NlaIII	CATG	9 cut(s)	233, 241, 290, 400, 406, 472, 493, 551, 574
NlaIV	GGNNCC	2 cut(s)	92, 394
PaqCI	CACCTGC	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	31, 54
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	92, 394
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
PsuI	RGATCY	3 cut(s)	117, 311, 392
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	303, 360
Sau3AI	GATC	8 cut(s)	43, 117, 147, 245, 292, 311, 392, 508
Sau96I	GGNCC	1 cut(s)	90
ScaI	AGTACT	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	2 cut(s)	193, 237
SetI	ASST	7 cut(s)	29, 69, 92, 111, 132, 325, 439
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	2 cut(s)	277, 351
SsiI	CCGC	2 cut(s)	339, 384
SspMI	CTAG	4 cut(s)	24, 342, 417, 450
StyD4I	CCNGG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	537
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	277, 351
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	31, 54
Tru1I	TTAA	2 cut(s)	303, 360
Tru9I	TTAA	2 cut(s)	303, 360
TscAI	CASTG	1 cut(s)	540
TspDTI	ATGAA	5 cut(s)	218, 413, 478, 485, 587
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	4 cut(s)	24, 342, 417, 450
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.