Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

1769384 .. 1770108

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAGAAGGAACCATTGTTTGAGACTACGAGAGCCAAGGGAAGAGTTCTATATAGGGTTTTTGCAGCATCTATATTTGCAGGAATATGTTTGGTTTGGGTTTACAGAGCGAGTCACATACCAAAAGCAGGAGAAGATGGAAGGTTTGGTTGGATTGGACTTTTGGGTGCTGAGATATGGTTTGGATTTTACTGGCTCCTCACTCAGGCCTCCCGGTGGAACCCTGTCTATAGGCACACCTTCAAAGATAGGCTTTCTCAAAGATATGAAAATGAGTTGCCGGGAGTGGATGTATTTGTGTGCACAGCGGACGCAACCATAGAGCCACCGCTGATGGTGATAAACACGGTTTTATCAGTGATGGCTTATGATTACCCGCCGGAGAAGCTGAGCGTCTATCTGTCCGATGACGGCGGGTCGGAAATTACATACTATGCTCTCTTGGAGGCTGCTGAGTTTGCGAAGCAGTGGATACCATATTGCAAGAGGTACAAAGTGGAGCCAAGGTCACCTGCTGCTTATTTTGTCTCAATATCTGCTGATGCAATTGTTGATCATCAGGCTAAAGATTTCTGGGCAATTAAGGTATTTTCAGTTCTTTTTTGTGGTCAGGTCCGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

208

Amino Acids

23.71

Weight (kDa)

6.31

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	520
Acc36I	ACCTGC	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	615
AciI	CCGC	4 cut(s)	308, 329, 377, 414
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	128, 205, 216
AgsI	TTSAA	1 cut(s)	244
AhdI	GACNNNNNGTC	1 cut(s)	415
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	17, 532
Alw44I	GTGCAC	1 cut(s)	301
Aor13HI	TCCGGA	1 cut(s)	615
AoxI	GGCC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	3 cut(s)	65, 449, 515
AspS9I	GGNCC	1 cut(s)	613
AsuC2I	CCSGG	2 cut(s)	214, 282
AsuHPI	GGTGA	2 cut(s)	349, 501
AvaII	GGWCC	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	305
BbvI	GCAGC	3 cut(s)	77, 436, 502
BccI	CCATC	3 cut(s)	131, 328, 355
BceAI	ACGGC	1 cut(s)	427
BciVI	GTATCC	1 cut(s)	465
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	2 cut(s)	214, 282
BcoDI	GTCTC	2 cut(s)	17, 532
BfmI	CTRYAG	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	465
BisI	GCNGC	3 cut(s)	66, 450, 516
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	3 cut(s)	67, 451, 517
Bme1390I	CCNGG	2 cut(s)	214, 282
Bme18I	GGWCC	1 cut(s)	613
BmeRI	GACNNNNNGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	4 cut(s)	12, 197, 221, 501
BmrFI	CCNGG	2 cut(s)	214, 282
BmsI	GCATC	2 cut(s)	77, 532
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	214, 282
BsaJI	CCNNGG	2 cut(s)	36, 503
BsaWI	WCCGGW	1 cut(s)	615
BsaXI	ACNNNNNCTCC	4 cut(s)	276, 306, 491, 521
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 205, 216
Bse1I	ACTGG	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	36, 503
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	3 cut(s)	128, 205, 216
BseMII	CTCAG	4 cut(s)	162, 218, 380, 444
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	77, 436, 502
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	214, 281, 380, 616
BslI	CCNNNNNNNGG	3 cut(s)	128, 205, 216
BsmAI	GTCTC	2 cut(s)	17, 532
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp13I	TCCGGA	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	553
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	4 cut(s)	308, 329, 377, 414
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	4 cut(s)	163, 217, 381, 445
BspEI	TCCGGA	1 cut(s)	615
BspLI	GGNNCC	4 cut(s)	12, 197, 221, 501
BspMI	ACCTGC	1 cut(s)	520
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	36, 503
BssMI	GATC	1 cut(s)	553
BssT1I	CCWWGG	2 cut(s)	36, 503
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	37
BstDEI	CTNAG	4 cut(s)	171, 204, 389, 453
BstEII	GGTNACC	1 cut(s)	507
BstENI	CCTNNNNNAGG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	2 cut(s)	17, 532
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 458
BstPI	GGTNACC	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	212, 280
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	77, 436, 502
BsuI	GTATCC	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	363, 473
BveI	ACCTGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	613
CseI	GACGC	2 cut(s)	320, 382
Csp6I	GTAC	1 cut(s)	490
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	4 cut(s)	171, 204, 389, 453
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
DriI	GACNNNNNGTC	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	36, 503
Eco147I	AGGCCT	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	613
Eco91I	GGTNACC	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	203
EcoO65I	GGTNACC	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	36, 503
ErhI	CCWWGG	2 cut(s)	36, 503
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FauI	CCCGC	2 cut(s)	384, 407
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	66, 450, 516
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	66, 450, 516
GluI	GCNGC	3 cut(s)	66, 450, 516
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	4 cut(s)	214, 281, 380, 616
HgaI	GACGC	2 cut(s)	320, 382
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	4 cut(s)	214, 281, 380, 616
HphI	GGTGA	2 cut(s)	349, 501
Hpy166II	GTNNAC	2 cut(s)	103, 303
Hpy188I	TCNGA	2 cut(s)	406, 421
Hpy188III	TCNNGA	1 cut(s)	616
Hpy8I	GTNNAC	2 cut(s)	103, 303
HpyAV	CCTTC	2 cut(s)	135, 250
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	65, 80, 303, 483, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 458
HpyF3I	CTNAG	4 cut(s)	171, 204, 389, 453
Kpn2I	TCCGGA	1 cut(s)	615
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	2 cut(s)	201, 499
Lsp1109I	GCAGC	3 cut(s)	77, 436, 502
LweI	GCATC	2 cut(s)	77, 532
MaeIII	GTNAC	2 cut(s)	113, 507
MalI	GATC	1 cut(s)	555
MboI	GATC	1 cut(s)	553
MboII	GAAGA	2 cut(s)	54, 146
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	4 cut(s)	423, 546, 579, 619
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	2 cut(s)	131, 399
MnlI	CCTC	4 cut(s)	209, 220, 439, 480
MroI	TCCGGA	1 cut(s)	615
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	308, 331
MspI	CCGG	4 cut(s)	214, 281, 380, 616
MspR9I	CCNGG	2 cut(s)	214, 282
MunI	CAATTG	1 cut(s)	546
MwoI	GCNNNNNNNGC	2 cut(s)	385, 458
NciI	CCSGG	2 cut(s)	214, 282
NdeII	GATC	1 cut(s)	553
NlaIV	GGNNCC	4 cut(s)	12, 197, 221, 501
NmuCI	GTSAC	2 cut(s)	113, 507
PaqCI	CACCTGC	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	209
PkrI	GCNGC	3 cut(s)	67, 451, 517
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	507
PspN4I	GGNNCC	4 cut(s)	12, 197, 221, 501
PspPI	GGNCC	1 cut(s)	613
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	3 cut(s)	66, 450, 516
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	214, 282
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	8 cut(s)	146, 242, 390, 491, 509, 514, 588, 615
SfaNI	GCATC	2 cut(s)	77, 532
SfcI	CTRYAG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	613
Sse9I	AATT	4 cut(s)	423, 546, 579, 619
SseBI	AGGCCT	1 cut(s)	209
SsiI	CCGC	4 cut(s)	308, 329, 377, 414
StuI	AGGCCT	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	212, 280
StyI	CCWWGG	2 cut(s)	36, 503
TaaI	ACNGT	1 cut(s)	349
TasI	AATT	4 cut(s)	423, 546, 579, 619
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	363, 473
TseFI	GTSAC	2 cut(s)	113, 507
TseI	GCWGC	3 cut(s)	65, 449, 515
Tsp45I	GTSAC	2 cut(s)	113, 507
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	363, 473
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	613
XagI	CCTNNNNNAGG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.