Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000184.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

71395 .. 72773

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000184.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggggaagaaggcaggaggagaaggagaagagaatataactactactactcttccattgtttgagagcaaaacagcaagatttagaggtgtttatagggtttttgcctcgacaatatttgtgggtgtgtgtttgatatgggtttacagactaataaacatcccgaaagctggagagagagggagatgggcttggattggtatgctcatggctgagttcttgtttggtttgtattggatcatcactcagtctgttcgctggagtgtcacttatcgtcaaccactcaagaatagactctcacagagatatgaggagaagttgccgggtgttgatgtttttatatgcactgcagacccgaaaatggagccgccaagtttggtgattaacactgtgttatcagtcctgtcctgcaattttccatctgtgaagtcgagtgtttatctctcggatgatggtggttcacagtttactttctatgctcttttggaggcgtctcggttctcgaagtattggatacccttttgcaagaagttcaaggttgaaccaagggcaccggaggcttactttgccctgcattctgacgttaatgacaccaaatatggtccagaatggtttgataccaagaaactttatgaagaaatgaaaaatcggatcgattctgttgttgaaagtgggaagaaaccagaagaaacaaggaatcaacacaaagggttctcagaatggaaccttaaagtagcaaagaatgatcatcactcaattgtgcagattataactgatggaagagacacaaatgccgtggacaacgatggatgccgattaccaactattgtctacatgtcaagagaaaagagaccccaacagccacacaacttcaaagctggagccatgaatgcactggttagctttagcttcctcacttgccaatgcattgttgacactaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

315

Amino Acids

36.13

Weight (kDa)

9.02

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	831
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	2 cut(s)	245, 659
AcyI	GRCGYC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	170, 361
AflIII	ACRYGT	1 cut(s)	834
AgsI	TTSAA	4 cut(s)	535, 542, 668, 874
AluBI	AGCT	4 cut(s)	170, 878, 903, 909
AluI	AGCT	4 cut(s)	170, 878, 903, 909
Alw26I	GTCTC	3 cut(s)	498, 777, 844
AlwI	GGATC	2 cut(s)	245, 659
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	391
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	553
BanI	GGYRCC	1 cut(s)	550
BccI	CCATC	5 cut(s)	180, 427, 446, 770, 800
BceAI	ACGGC	1 cut(s)	779
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	3 cut(s)	498, 777, 844
BfmI	CTRYAG	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	4 cut(s)	366, 552, 725, 883
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	800
BpmI	CTGGAG	3 cut(s)	192, 280, 900
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	324
Bsa29I	ATCGAT	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	491
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	2 cut(s)	545, 795
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 361
Bse1I	ACTGG	1 cut(s)	900
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	545, 795
BseGI	GGATG	3 cut(s)	159, 454, 815
BseLI	CCNNNNNNNGG	2 cut(s)	170, 361
BseMII	CTCAG	3 cut(s)	204, 260, 729
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	2 cut(s)	33, 326
BseSI	GKGCMC	1 cut(s)	553
BsgI	GTGCAG	1 cut(s)	782
BshNI	GGYRCC	1 cut(s)	550
BshVI	ATCGAT	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	323, 554
BslI	CCNNNNNNNGG	2 cut(s)	170, 361
BsmAI	GTCTC	3 cut(s)	498, 777, 844
BsmBI	CGTCTC	1 cut(s)	498
BsmI	GAATGC	2 cut(s)	574, 895
Bso31I	GGTCTC	1 cut(s)	844
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	237, 651, 745
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	205, 259, 728
BspDI	ATCGAT	1 cut(s)	654
BspLI	GGNNCC	4 cut(s)	366, 552, 725, 883
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	2 cut(s)	245, 659
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	844
BsrI	ACTGG	1 cut(s)	900
BssECI	CCNNGG	2 cut(s)	545, 795
BssMI	GATC	3 cut(s)	237, 651, 745
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	391, 465
Bst6I	CTCTTC	3 cut(s)	24, 57, 775
BstACI	GRCGYC	1 cut(s)	491
BstDEI	CTNAG	4 cut(s)	213, 246, 715, 939
BstDSI	CCRYGG	1 cut(s)	795
BstF5I	GGATG	3 cut(s)	159, 454, 815
BstKTI	GATC	3 cut(s)	240, 654, 748
BstMAI	GTCTC	3 cut(s)	498, 777, 844
BstMBI	GATC	3 cut(s)	237, 651, 745
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 566, 890
BstNSI	RCATGY	1 cut(s)	838
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	553
Bsu15I	ATCGAT	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	507
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	159, 454, 815
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	345, 387, 893
Cfr13I	GGNCC	1 cut(s)	602
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	1 cut(s)	480
CspCI	CAANNNNNGTGG	4 cut(s)	102, 137, 777, 812
CviAII	CATG	3 cut(s)	208, 835, 886
DdeI	CTNAG	4 cut(s)	213, 246, 715, 939
DpnI	GATC	3 cut(s)	239, 653, 747
DpnII	GATC	3 cut(s)	237, 651, 745
Eam1104I	CTCTTC	3 cut(s)	24, 57, 775
EarI	CTCTTC	3 cut(s)	24, 57, 775
Eco130I	CCWWGG	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	929
ErhI	CCWWGG	1 cut(s)	545
Esp3I	CGTCTC	1 cut(s)	498
FaeI	CATG	3 cut(s)	211, 838, 889
FatI	CATG	3 cut(s)	207, 834, 885
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	831
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	3 cut(s)	146, 461, 822
Fsp4HI	GCNGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	368
GsuI	CTGGAG	3 cut(s)	192, 280, 900
HapII	CCGG	2 cut(s)	323, 554
HgaI	GACGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	3 cut(s)	211, 838, 889
HincII	GTYRAC	2 cut(s)	278, 934
HindII	GTYRAC	2 cut(s)	278, 934
HinfI	GANTC	3 cut(s)	294, 656, 697
HpaII	CCGG	2 cut(s)	323, 554
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	7 cut(s)	145, 278, 461, 468, 799, 832, 934
Hpy188I	TCNGA	4 cut(s)	448, 580, 651, 718
Hpy188III	TCNNGA	5 cut(s)	163, 286, 502, 605, 840
Hpy8I	GTNNAC	7 cut(s)	145, 278, 461, 468, 799, 832, 934
HpyAV	CCTTC	2 cut(s)	4, 17
HpyCH4III	ACNGT	2 cut(s)	391, 465
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	8 cut(s)	345, 350, 411, 525, 574, 763, 893, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 566, 890
HpyF3I	CTNAG	4 cut(s)	213, 246, 715, 939
HpySE526I	ACGT	1 cut(s)	582
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	211, 838, 889
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	3 cut(s)	237, 651, 745
LmnI	GCTCC	2 cut(s)	364, 881
LweI	GCATC	1 cut(s)	800
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	3 cut(s)	239, 653, 747
MboI	GATC	3 cut(s)	237, 651, 745
MboII	GAAGA	7 cut(s)	19, 41, 44, 647, 688, 698, 792
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	2 cut(s)	412, 756
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	8 cut(s)	11, 80, 118, 173, 304, 481, 550, 923
Mph1103I	ATGCAT	1 cut(s)	929
MseI	TTAA	4 cut(s)	384, 585, 729, 946
MspI	CCGG	2 cut(s)	323, 554
MspR9I	CCNGG	1 cut(s)	324
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	2 cut(s)	574, 895
MwoI	GCNNNNNNNGC	3 cut(s)	557, 566, 890
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	3 cut(s)	237, 651, 745
NlaIII	CATG	3 cut(s)	211, 838, 889
NlaIV	GGNNCC	4 cut(s)	366, 552, 725, 883
NmuCI	GTSAC	1 cut(s)	265
NsiI	ATGCAT	1 cut(s)	929
NspI	RCATGY	1 cut(s)	838
PciI	ACATGT	1 cut(s)	834
PctI	GAATGC	2 cut(s)	574, 895
PfeI	GAWTC	2 cut(s)	656, 697
PkrI	GCNGC	1 cut(s)	369
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PscI	ACATGT	1 cut(s)	834
PsiI	TTATAA	1 cut(s)	770
PspN4I	GGNNCC	4 cut(s)	366, 552, 725, 883
PspPI	GGNCC	1 cut(s)	602
PstI	CTGCAG	1 cut(s)	352
SaqAI	TTAA	4 cut(s)	384, 585, 729, 946
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	3 cut(s)	237, 651, 745
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	8 cut(s)	91, 172, 540, 585, 729, 880, 905, 911
SfaNI	GCATC	1 cut(s)	800
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	412, 756
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	2 cut(s)	391, 465
TaiI	ACGT	1 cut(s)	585
TaqI	TCGA	4 cut(s)	110, 431, 503, 654
TasI	AATT	2 cut(s)	412, 756
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	656, 697
Tru1I	TTAA	4 cut(s)	384, 585, 729, 946
Tru9I	TTAA	4 cut(s)	384, 585, 729, 946
TscAI	CASTG	3 cut(s)	352, 394, 900
TseFI	GTSAC	1 cut(s)	265
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	648, 656, 902
TspRI	CASTG	3 cut(s)	352, 394, 900
VpaK11BI	GGWCC	1 cut(s)	602
XceI	RCATGY	1 cut(s)	838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.