pycom03g02380

Belongs to the glycosyltransferase 2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000273
Physical Location & Seq
Reverse (-)
1795859 .. 1796879
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02380.2

Sequence Viewer

Length: 948 bp
ATGGGATTGAAATATGGATGTCCGGTAGAAGATGTGATCACAGGGCTATCAATCCAATGCCATGGTTGGAAATCAGTGTATTGCAATCCCACAAGGAAAGCTTTCTTAGGAGTAGCCCCAACTACGCTAACTCAGACTCTTGTGCAGCATAAGAGATGGACAGAAGGCGATTTCCAGATTTTGTTCACTAAATACAGCCCTGCATGGTATGCACATGGAAAAATTAGCTTTGGTCTTCAACTTGGATATTGTTGCTTCTGCTTCTGGTGTTCGAATTCCTTGGCAACGTTATTTTATTCGATTGTCCCTTCCCTTTACCTCCTCAAAGGCATTTCCTTATTTCCACAGGTCTCGAGCCCTTGGCTCATACCATTTGCATACGTGATAATTTCGAAGTACACTTGGAGTTTTGTTGAGTTTTTGGGGTGTGGTGGCACAATCTTAGGTTGGTGGAACGATCAACGAATTTGGCTTTACAAGAGAACAAGTTCCTACCTATTTGCCTTCATTGACACCATTTTAAACTCGCTTGGATATTCTGATACAGCATTCGTAATAACATCTAAGGTGGATGATGAAGATGTGTCAGAACGATACAAGAAAGAGGTTATGGAATTTGGAGATTCGTCGCCAATGTTTACCGTACTTGCAACACTAGCAATTCTCAATTTGTACTGCTTCCTTGGGTTTTTAAACAAAGCAATCTCTGGAGAAGGAATAGCAGAAGCTTATGAGAAAATGCCTTTGCAAATTCTTCTGTGTGGGGTTTTAGTTCTTCTCAACCTACCATTATACCAGGCCCTTTACCTAAGGAAGGACAAGGGAAAGCTGCCAAGCTCTGTAGCTTTTAAATCAATGGCATTTGCAGTATCTGCTTGTATCTGTTTCCAATATTTATATAAAAAAAAATGTGCTATTAGAACCATTAGAAATTGTTATTACCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cellulose_synt

Protein Analysis

316

Amino Acids

35.77

Weight (kDa)

8.81

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55850
fragaria_vesca FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 287
AcsI RAATTY 4 cut(s) 274, 465, 614, 750
AfaI GTAC 3 cut(s) 398, 645, 674
AfiI CCNNNNNNNGG 1 cut(s) 814
AgsI TTSAA 2 cut(s) 10, 239
AjnI CCWGG 1 cut(s) 795
AluBI AGCT 6 cut(s) 101, 228, 728, 829, 837, 845
AluI AGCT 6 cut(s) 101, 228, 728, 829, 837, 845
Alw26I GTCTC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 145, 829
ApoI RAATTY 4 cut(s) 274, 465, 614, 750
Asp700I GAANNNNTTC 2 cut(s) 101, 487
AspS9I GGNCC 1 cut(s) 799
AsuII TTCGAA 2 cut(s) 272, 392
AvaI CYCGRG 1 cut(s) 352
AxyI CCTNAGG 1 cut(s) 809
BanII GRGCYC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 157, 816
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 797
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 1 cut(s) 656
BfmI CTRYAG 1 cut(s) 840
BisI GCNGC 2 cut(s) 146, 830
BlsI GCNGC 2 cut(s) 147, 831
Bme1390I CCNGG 1 cut(s) 797
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 799
BmrFI CCNGG 1 cut(s) 797
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 729
Bpu14I TTCGAA 2 cut(s) 272, 392
BsaAI YACGTR 1 cut(s) 382
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 4 cut(s) 61, 279, 359, 682
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse21I CCTNAGG 1 cut(s) 809
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 4 cut(s) 61, 279, 359, 682
BseGI GGATG 2 cut(s) 23, 577
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMII CTCAG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 157, 816
BsgI GTGCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 800
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 1 cut(s) 800
Bso31I GGTCTC 1 cut(s) 355
BsoBI CYCGRG 1 cut(s) 352
Bsp119I TTCGAA 2 cut(s) 272, 392
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 36, 457
Bsp19I CCATGG 1 cut(s) 61
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 1 cut(s) 145
BspT104I TTCGAA 2 cut(s) 272, 392
BspTNI GGTCTC 1 cut(s) 355
BssECI CCNNGG 4 cut(s) 61, 279, 359, 682
BssMI GATC 2 cut(s) 36, 457
BssT1I CCWWGG 4 cut(s) 61, 279, 359, 682
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 1 cut(s) 643
BstAPI GCANNNNNTGC 2 cut(s) 209, 872
BstBAI YACGTR 1 cut(s) 382
BstBI TTCGAA 2 cut(s) 272, 392
BstDEI CTNAG 5 cut(s) 106, 132, 442, 564, 809
BstDSI CCRYGG 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 812
BstF5I GGATG 2 cut(s) 23, 577
BstKTI GATC 2 cut(s) 39, 460
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 2 cut(s) 36, 457
BstMWI GCNNNNNNNGC 3 cut(s) 209, 656, 872
BstNI CCWGG 1 cut(s) 797
BstSCI CCNGG 1 cut(s) 795
BstSFI CTRYAG 1 cut(s) 840
BstV1I GCAGC 2 cut(s) 157, 816
BstV2I GAAGAC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 62
Bsu36I CCTNAGG 1 cut(s) 809
BsuRI GGCC 1 cut(s) 800
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 23, 577
BtsIMutI CAGTG 1 cut(s) 81
CaiI CAGNNNCTG 1 cut(s) 872
Cfr13I GGNCC 1 cut(s) 799
Csp6I GTAC 3 cut(s) 397, 644, 673
CviAII CATG 3 cut(s) 62, 204, 215
CviQI GTAC 3 cut(s) 397, 644, 673
DdeI CTNAG 5 cut(s) 106, 132, 442, 564, 809
DpnI GATC 2 cut(s) 38, 459
DpnII GATC 2 cut(s) 36, 457
DraI TTTAAA 3 cut(s) 522, 693, 850
Eco130I CCWWGG 4 cut(s) 61, 279, 359, 682
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 809
Eco88I CYCGRG 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 812
EcoO109I RGGNCCY 1 cut(s) 799
EcoRI GAATTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 795
EcoT14I CCWWGG 4 cut(s) 61, 279, 359, 682
EcoT38I GRGCYC 1 cut(s) 359
ErhI CCWWGG 4 cut(s) 61, 279, 359, 682
FaeI CATG 3 cut(s) 65, 207, 218
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 290
FatI CATG 3 cut(s) 61, 203, 214
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 146, 830
FokI GGATG 2 cut(s) 30, 584
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 146, 830
FspBI CTAG 1 cut(s) 656
GluI GCNGC 2 cut(s) 146, 830
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 1 cut(s) 800
HapII CCGG 1 cut(s) 23
Hin1II CATG 3 cut(s) 65, 207, 218
HindIII AAGCTT 2 cut(s) 99, 726
HinfI GANTC 2 cut(s) 136, 623
HpaII CCGG 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 186, 399, 639
Hpy188I TCNGA 3 cut(s) 135, 541, 589
Hpy188III TCNNGA 3 cut(s) 175, 352, 708
Hpy8I GTNNAC 3 cut(s) 186, 399, 639
Hpy99I CGWCG 1 cut(s) 631
HpyAV CCTTC 5 cut(s) 158, 318, 514, 707, 808
HpyCH4III ACNGT 1 cut(s) 643
HpyCH4IV ACGT 2 cut(s) 287, 381
HpyCH4V TGCA 8 cut(s) 84, 145, 203, 212, 377, 650, 748, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 656, 872
HpyF3I CTNAG 5 cut(s) 106, 132, 442, 564, 809
HpySE526I ACGT 2 cut(s) 287, 381
Hsp92II CATG 3 cut(s) 65, 207, 218
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 2 cut(s) 36, 457
LpnPI CCDG 9 cut(s) 27, 36, 188, 213, 250, 332, 693, 782, 809
Lsp1109I GCAGC 2 cut(s) 157, 816
MaeI CTAG 1 cut(s) 656
MaeII ACGT 2 cut(s) 287, 381
MalI GATC 2 cut(s) 38, 459
MboI GATC 2 cut(s) 36, 457
MboII GAAGA 5 cut(s) 41, 227, 590, 746, 767
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 9 cut(s) 222, 274, 387, 465, 614, 660, 667, 750, 931
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 3 cut(s) 329, 332, 598
MroXI GAANNNNTTC 2 cut(s) 101, 487
MseI TTAA 3 cut(s) 521, 692, 849
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 797
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 1 cut(s) 797
MwoI GCNNNNNNNGC 3 cut(s) 209, 656, 872
NcoI CCATGG 1 cut(s) 61
NdeII GATC 2 cut(s) 36, 457
NlaIII CATG 3 cut(s) 65, 207, 218
NspV TTCGAA 2 cut(s) 272, 392
PaeR7I CTCGAG 1 cut(s) 352
PctI GAATGC 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 101, 487
PfeI GAWTC 1 cut(s) 623
PkrI GCNGC 2 cut(s) 147, 831
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Ppu21I YACGTR 1 cut(s) 382
Psp1406I AACGTT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 795
PspGI CCWGG 1 cut(s) 795
PspPI GGNCC 1 cut(s) 799
PstNI CAGNNNCTG 1 cut(s) 872
RsaI GTAC 3 cut(s) 398, 645, 674
RsaNI GTAC 3 cut(s) 397, 644, 673
SaqAI TTAA 3 cut(s) 521, 692, 849
SatI GCNGC 2 cut(s) 146, 830
Sau3AI GATC 2 cut(s) 36, 457
Sau96I GGNCC 1 cut(s) 799
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 797
SduI GDGCHC 1 cut(s) 359
SfcI CTRYAG 1 cut(s) 840
Sfr274I CTCGAG 1 cut(s) 352
SfuI TTCGAA 2 cut(s) 272, 392
SlaI CTCGAG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 9 cut(s) 222, 274, 387, 465, 614, 660, 667, 750, 931
SspI AATATT 1 cut(s) 893
SspMI CTAG 1 cut(s) 656
StyD4I CCNGG 1 cut(s) 795
StyI CCWWGG 4 cut(s) 61, 279, 359, 682
TaaI ACNGT 1 cut(s) 643
TaiI ACGT 2 cut(s) 290, 384
TaqI TCGA 4 cut(s) 272, 299, 353, 392
TasI AATT 9 cut(s) 222, 274, 387, 465, 614, 660, 667, 750, 931
TatI WGTACW 2 cut(s) 396, 672
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 3 cut(s) 521, 692, 849
Tru9I TTAA 3 cut(s) 521, 692, 849
TscAI CASTG 1 cut(s) 81
TseI GCWGC 2 cut(s) 145, 829
TspDTI ATGAA 2 cut(s) 496, 591
TspRI CASTG 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 812
XapI RAATTY 4 cut(s) 274, 465, 614, 750
XhoI CTCGAG 1 cut(s) 352
XmnI GAANNNNTTC 2 cut(s) 101, 487
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.