Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013263.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

8563 .. 10783

Gene Structure 2221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013263.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 860 bp

ggttatccatccaatgccgtggatggaaatcagtgtactgcaatccaactaggaaagctttcttaggattagctccaactacactgcctcagacacttttgcagcacacgagatggtcagaaggtgatttccagattttggtttctaagtatagccctgcattgtacgggcatggaaagattagtttaggccttcaacttggatattgctgctactgcctgtgggctccaaattgcttggcgacactattttactcaattctcccttcaatttaccttcttagaggcatttctgtattcccacagatctcaagtccgtggttcataccatttgcgtatgtgataattgccaagtacacttggagctttggggagtttttgtggtctggtggcacaatcttgggatggtggaacgaccaacgaatatggctatacaaaagaacaagctcctacctatttgccttcatcgataccattttgtactgtctagggtattcggattcagcgtttgtaataacagccaaggtggccgatgaagatgtgtcacaaagatacgagaaagagattatggaattcggagcctcatctgcaatgttcgtcatattagcaacagttgcattgctcaatttgtactgctttgctgggtttctcaaggaagcgatcactagaaaaggcattgttggagtttatgagacaatggctttgcaaattcttctatgtggtgttttaattgtcatcaacctgcctttgtaccaagctctttacttgaggaaagacaatggaaaaatgccaagttctgtggtatttaaatcgatggcatttgttgcattttcttgtgtatgtactaaattcttgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

285

Amino Acids

32.27

Weight (kDa)

8.88

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	749
AccB7I	CCANNNNNTGG	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	527
AcsI	RAATTY	3 cut(s)	571, 707, 847
AfaI	GTAC	7 cut(s)	37, 166, 355, 481, 631, 751, 843
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	2 cut(s)	196, 269
AluBI	AGCT	5 cut(s)	58, 73, 365, 446, 757
AluI	AGCT	5 cut(s)	58, 73, 365, 446, 757
Alw26I	GTCTC	1 cut(s)	685
AoxI	GGCC	2 cut(s)	189, 527
ApeKI	GCWGC	2 cut(s)	102, 209
ApoI	RAATTY	3 cut(s)	571, 707, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	684, 716
Asp700I	GAANNNNTTC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	228
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	114, 196
BccI	CCATC	5 cut(s)	16, 17, 107, 398, 807
BceAI	ACGGC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	3 cut(s)	50, 487, 665
BfuAI	ACCTGC	1 cut(s)	749
BglI	GCCNNNNNGGC	1 cut(s)	526
BglII	AGATCT	1 cut(s)	305
BisI	GCNGC	2 cut(s)	103, 210
BlsI	GCNGC	2 cut(s)	104, 211
BmiI	GGNNCC	2 cut(s)	227, 579
BpuEI	CTTGAG	3 cut(s)	294, 634, 786
Bsa29I	ATCGAT	2 cut(s)	467, 811
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	18, 316, 521
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse3DI	GCAATG	2 cut(s)	596, 616
Bse8I	GATNNNNATC	1 cut(s)	27
BseCI	ATCGAT	2 cut(s)	467, 811
BseDI	CCNNGG	3 cut(s)	18, 316, 521
BseGI	GGATG	3 cut(s)	8, 28, 409
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	596, 616
BseMII	CTCAG	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	114, 196
BseYI	CCCAGC	1 cut(s)	640
BshFI	GGCC	2 cut(s)	191, 529
BshVI	ATCGAT	2 cut(s)	467, 811
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	191, 529
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	305, 659
BspANI	GGCC	2 cut(s)	191, 529
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	2 cut(s)	467, 811
BspLI	GGNNCC	2 cut(s)	227, 579
BspMI	ACCTGC	1 cut(s)	749
BsrDI	GCAATG	2 cut(s)	596, 616
BssECI	CCNNGG	3 cut(s)	18, 316, 521
BssMI	GATC	2 cut(s)	305, 659
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	484, 612
BstAPI	GCANNNNNTGC	2 cut(s)	613, 823
BstDEI	CTNAG	4 cut(s)	63, 89, 146, 280
BstDSI	CCRYGG	2 cut(s)	18, 316
BstF5I	GGATG	3 cut(s)	8, 28, 409
BstKTI	GATC	2 cut(s)	308, 662
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	2 cut(s)	305, 659
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 526, 586, 613, 823
BstV1I	GCAGC	2 cut(s)	114, 196
BstX2I	RGATCY	1 cut(s)	305
BstXI	CCANNNNNNTGG	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	305
Bsu15I	ATCGAT	2 cut(s)	467, 811
BsuRI	GGCC	2 cut(s)	191, 529
BsuTUI	ATCGAT	2 cut(s)	467, 811
BtgI	CCRYGG	2 cut(s)	18, 316
BtsCI	GGATG	3 cut(s)	8, 28, 409
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	38, 82
BveI	ACCTGC	1 cut(s)	749
ClaI	ATCGAT	2 cut(s)	467, 811
Csp6I	GTAC	7 cut(s)	36, 165, 354, 480, 630, 750, 842
CspCI	CAANNNNNGTGG	2 cut(s)	779, 814
CviAII	CATG	1 cut(s)	172
CviQI	GTAC	7 cut(s)	36, 165, 354, 480, 630, 750, 842
DdeI	CTNAG	4 cut(s)	63, 89, 146, 280
DpnI	GATC	2 cut(s)	307, 661
DpnII	GATC	2 cut(s)	305, 659
DraI	TTTAAA	1 cut(s)	807
EaeI	YGGCCR	1 cut(s)	527
Eco130I	CCWWGG	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	228
EcoRI	GAATTC	1 cut(s)	571
EcoT14I	CCWWGG	1 cut(s)	521
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	1 cut(s)	175
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	103, 210
FokI	GGATG	2 cut(s)	35, 416
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	103, 210
FspBI	CTAG	3 cut(s)	50, 487, 665
GluI	GCNGC	2 cut(s)	103, 210
GsaI	CCCAGC	1 cut(s)	644
HaeIII	GGCC	2 cut(s)	191, 529
Hin1II	CATG	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	499
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	36, 356
Hpy188I	TCNGA	4 cut(s)	92, 120, 498, 577
Hpy188III	TCNNGA	1 cut(s)	132
Hpy8I	GTNNAC	2 cut(s)	36, 356
HpyAV	CCTTC	5 cut(s)	115, 202, 275, 286, 471
HpyCH4III	ACNGT	2 cut(s)	484, 612
HpyCH4V	TGCA	7 cut(s)	41, 102, 160, 589, 616, 705, 826
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 526, 586, 613, 823
HpyF3I	CTNAG	4 cut(s)	63, 89, 146, 280
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	305, 659
LmnI	GCTCC	5 cut(s)	78, 231, 362, 451, 577
LpnPI	CCDG	6 cut(s)	145, 170, 232, 371, 626, 754
Lsp1109I	GCAGC	2 cut(s)	114, 196
MaeI	CTAG	3 cut(s)	50, 487, 665
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	2 cut(s)	307, 661
MboI	GATC	2 cut(s)	305, 659
MboII	GAAGA	2 cut(s)	547, 703
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	9 cut(s)	231, 257, 269, 344, 571, 624, 707, 728, 847
MmeI	TCCRAC	3 cut(s)	70, 100, 660
MnlI	CCTC	4 cut(s)	98, 277, 591, 761
MroXI	GAANNNNTTC	1 cut(s)	58
MseI	TTAA	3 cut(s)	727, 806, 858
MwoI	GCNNNNNNNGC	5 cut(s)	215, 526, 586, 613, 823
NdeII	GATC	2 cut(s)	305, 659
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	227, 579
NmuCI	GTSAC	1 cut(s)	542
PceI	AGGCCT	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	104, 211
PspFI	CCCAGC	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	227, 579
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	7 cut(s)	37, 166, 355, 481, 631, 751, 843
RsaNI	GTAC	7 cut(s)	36, 165, 354, 480, 630, 750, 842
SaqAI	TTAA	3 cut(s)	727, 806, 858
SatI	GCNGC	2 cut(s)	103, 210
Sau3AI	GATC	2 cut(s)	305, 659
SduI	GDGCHC	1 cut(s)	228
SmiI	ATTTAAAT	1 cut(s)	807
SmlI	CTYRAG	3 cut(s)	309, 649, 765
SmoI	CTYRAG	3 cut(s)	309, 649, 765
Sse9I	AATT	9 cut(s)	231, 257, 269, 344, 571, 624, 707, 728, 847
SseBI	AGGCCT	1 cut(s)	191
SspMI	CTAG	3 cut(s)	50, 487, 665
StuI	AGGCCT	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	521
SwaI	ATTTAAAT	1 cut(s)	807
TaaI	ACNGT	2 cut(s)	484, 612
TaqI	TCGA	2 cut(s)	467, 811
TasI	AATT	9 cut(s)	231, 257, 269, 344, 571, 624, 707, 728, 847
TatI	WGTACW	5 cut(s)	35, 353, 479, 629, 841
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	3 cut(s)	727, 806, 858
Tru9I	TTAA	3 cut(s)	727, 806, 858
TscAI	CASTG	2 cut(s)	38, 89
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	2 cut(s)	102, 209
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	3 cut(s)	312, 453, 548
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	38, 89
Van91I	CCANNNNNTGG	1 cut(s)	138
XapI	RAATTY	3 cut(s)	571, 707, 847
XmnI	GAANNNNTTC	1 cut(s)	58
XspI	CTAG	3 cut(s)	50, 487, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.