Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

2642181 .. 2642599

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g03430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGTTTGCTATATCATGGATTCTGGATCAGTTCCCCAAATGGCATCCAATAGAGCGAGAAACATACCTAGATCGACTATCACTTGGGTAGGGTATGAAAAGGAAGGGAAGCCATCTGAATTAGCCAGTGTAGACATCTTTGTTAGTACAGTTGACCCTATGAAAGAACCTCCTCTAATCACTGCAAACACGGTTCTGTCCATCCTTGCGGTTGATTATCCAGTTGATAAAGTTGCATGCTATGTCTCGGATGATGGTGCTGCCATGCTTACTTTTGAAGCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0005975 GO:0005976 GO:0006073 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009825 GO:0009832 GO:0009833 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010330 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0022414 GO:0030243 GO:0030244 GO:0030865 GO:0031122 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051273 GO:0051274 GO:0051301 GO:0061458 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097435 GO:1901576 GO:1902494 GO:1903047 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

96

Amino Acids

10.3

Weight (kDa)

4.39

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	44 - 95	8.2e-28	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	278
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	121, 209, 248
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmsI	GCATC	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	126, 221
BseGI	GGATG	3 cut(s)	44, 201, 256
BseNI	ACTGG	2 cut(s)	126, 221
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	26, 71
BspACI	CCGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	126, 221
BssMI	GATC	2 cut(s)	26, 71
Bst4CI	ACNGT	2 cut(s)	151, 193
BstC8I	GCNNGC	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	44, 201, 256
BstKTI	GATC	2 cut(s)	29, 74
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	26, 71
BstNSI	RCATGY	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	44, 201, 256
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	133, 180
Cac8I	GCNNGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	16, 237, 265
CviJI	RGCY	3 cut(s)	112, 125, 281
CviKI_1	RGCY	3 cut(s)	112, 125, 281
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	2 cut(s)	28, 73
DpnII	GATC	2 cut(s)	26, 71
FaeI	CATG	3 cut(s)	19, 240, 268
FaiI	YATR	8 cut(s)	12, 17, 65, 96, 161, 238, 243, 266
FatI	CATG	3 cut(s)	15, 236, 264
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	31, 188, 263
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	19, 240, 268
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	133, 154
Hpy188I	TCNGA	3 cut(s)	118, 250, 287
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	133, 154
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	151, 193
HpyCH4V	TGCA	2 cut(s)	185, 236
Hsp92II	CATG	3 cut(s)	19, 240, 268
Kzo9I	GATC	2 cut(s)	26, 71
LpnPI	CCDG	3 cut(s)	9, 139, 234
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	69
MalI	GATC	2 cut(s)	28, 73
MboI	GATC	2 cut(s)	26, 71
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	2 cut(s)	180, 183
NdeII	GATC	2 cut(s)	26, 71
NlaIII	CATG	3 cut(s)	19, 240, 268
NspI	RCATGY	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	26, 71
SetI	ASST	3 cut(s)	70, 172, 283
SfaNI	GCATC	1 cut(s)	53
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	151, 193
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	119
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	20
TscAI	CASTG	2 cut(s)	133, 187
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	111, 176
TspRI	CASTG	2 cut(s)	133, 187
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.