Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208886.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

191 .. 661

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208886.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgtgtggcggtacactcaaagcatggtggaacctacaaagaatgtggcttatccgacgaatcacttcgtacttctttgccttcttcgacaccataaagaggcaattggggatatctgaaacacactttgccctcaccgataaggttgtcaccgaggatgtgataaagaggtacgagcaggaggttttggaatttggaagctcaagcattatgtacactgtaatggcaacatcggcattgctgaacttggtgagcctagtttggggaacaaagcgggttgtgatggatttagagttgaaggccttagaccagttcattagtcaagttattctttgtggcatattggttttgatcaacataccagtgtatgaagctctcttcttgcgcagtgataagggccatataccctcctctgtcatgtacaagtctgtctttgtgctcacgttggcatgcttgatgcctatatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

156

Amino Acids

17.85

Weight (kDa)

8.37

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	386
AciI	CCGC	2 cut(s)	9, 274
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	5 cut(s)	13, 71, 173, 215, 422
AfiI	CCNNNNNNNGG	2 cut(s)	99, 262
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	2 cut(s)	201, 374
AluI	AGCT	2 cut(s)	201, 374
Alw21I	GWGCWC	1 cut(s)	441
AoxI	GGCC	2 cut(s)	300, 397
ApoI	RAATTY	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	3 cut(s)	127, 142, 262
Bbv12I	GWGCWC	1 cut(s)	441
BccI	CCATC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	351
BfaI	CTAG	2 cut(s)	257, 469
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 262
Bse1I	ACTGG	2 cut(s)	310, 362
Bse3DI	GCAATG	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	99, 262
BseMI	GCAATG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	310, 362
BseRI	GAGGAG	1 cut(s)	400
BshFI	GGCC	2 cut(s)	302, 399
BsiHKAI	GWGCWC	1 cut(s)	441
BslI	CCNNNNNNNGG	2 cut(s)	99, 262
BsnI	GGCC	2 cut(s)	302, 399
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	2 cut(s)	213, 420
Bsp143I	GATC	1 cut(s)	351
BspACI	CCGC	2 cut(s)	9, 274
BspANI	GGCC	2 cut(s)	302, 399
BspLI	GGNNCC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	236
BsrGI	TGTACA	2 cut(s)	213, 420
BsrI	ACTGG	2 cut(s)	310, 362
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	383
BstAUI	TGTACA	2 cut(s)	213, 420
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	1 cut(s)	453
BsuRI	GGCC	2 cut(s)	302, 399
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	216, 369, 394
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	5 cut(s)	12, 70, 172, 214, 421
CspCI	CAANNNNNGTGG	2 cut(s)	26, 61
CviAII	CATG	3 cut(s)	24, 418, 450
CviJI	RGCY	6 cut(s)	49, 201, 255, 302, 374, 399
CviKI_1	RGCY	6 cut(s)	49, 201, 255, 302, 374, 399
CviQI	GTAC	5 cut(s)	12, 70, 172, 214, 421
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco147I	AGGCCT	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	114
FaeI	CATG	3 cut(s)	27, 421, 453
FalI	AAGNNNNNCTT	4 cut(s)	315, 347, 416, 448
FatI	CATG	3 cut(s)	23, 417, 449
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	351
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	2 cut(s)	257, 469
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	302, 399
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	27, 421, 453
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	3 cut(s)	127, 142, 262
Hpy166II	GTNNAC	2 cut(s)	14, 216
Hpy188I	TCNGA	2 cut(s)	56, 118
Hpy8I	GTNNAC	2 cut(s)	14, 216
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	91, 292
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	27, 421, 453
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	351
LpnPI	CCDG	3 cut(s)	164, 323, 375
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	2 cut(s)	257, 469
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	2 cut(s)	76, 370
MfeI	CAATTG	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	2 cut(s)	104, 191
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	93, 143, 148, 162, 175, 418, 421
MroXI	GAANNNNTTC	1 cut(s)	64
MslI	CAYNNNNRTG	2 cut(s)	221, 362
MunI	CAATTG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	3 cut(s)	27, 421, 453
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	386
NspI	RCATGY	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	397
RsaI	GTAC	5 cut(s)	13, 71, 173, 215, 422
RsaNI	GTAC	5 cut(s)	12, 70, 172, 214, 421
RseI	CAYNNNNRTG	2 cut(s)	221, 362
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	7 cut(s)	36, 147, 173, 186, 203, 376, 446
SfaNI	GCATC	1 cut(s)	447
SmiMI	CAYNNNNRTG	2 cut(s)	221, 362
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	104, 191
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	9, 274
SspMI	CTAG	2 cut(s)	257, 469
StuI	AGGCCT	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	104, 191
TatI	WGTACW	2 cut(s)	213, 420
TfiI	GAWTC	1 cut(s)	60
TscAI	CASTG	3 cut(s)	223, 369, 394
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	304, 384
TspRI	CASTG	3 cut(s)	223, 369, 394
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	64
XspI	CTAG	2 cut(s)	257, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.