Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

62215850 .. 62217841

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0449300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGATTTCTTAGCCAAAGTTTCAGGTTTGAAGGTGGCGGGAGACAAATAATAGGTTTGAACAGAACCGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTACTTGCACCCTGGCCTCAAAAGAGGCAAGATGACCCCTCAAGAAGAGCGCCTTGTGCTTGAGCTTCACTCCAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAGTTACCAGGGAGGACTGATAATGAGATTAAGAATTATTGGAGGACTCATATGAGGAAGAAGGCTCAAGAGAAGAAGAGGGCTGTGTCACCATCATCATCATCTTCCAACTGTTCATCATCATCAAACATCACCACCAATGAAGGAGGAGCAAGCTTTTATGACACCGGTGGGGCTGAAATCGTGGCTTCATCAGCAGAGAAGAAAAATATCAACAGTGGAGATCAAGAGAAAGAAGATGGTAATGACACTACTAAAAGGGACCAAAGGGAGTATTCACTTGATGATATATGGAAAGACATCAATTTGCCAGAAGTGAACAGTATTGAACCAGTTTATGATGGCAGCTATGGTGAAGAAGTCTGCAAATTTTCATGCCCTTTAATGGCTACTCCTCCTCCACTGTCATGGGATTCACTGTTTAAAATAGATGAAGATCAAGAGAGTAAGAATATGTTTCTGCCTACTACCCCAAGTGACAATCAATTCCTGTCCTGTTTTGAATATGGAAAGGCATCGTCTCTAACTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

245

Amino Acids

27.66

Weight (kDa)

8.2

Isoelectric Point (pI)

57.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	41 - 85	3.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	45 - 92	6.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	572
AfiI	CCNNNNNNNGG	1 cut(s)	589
AgeI	ACCGGT	2 cut(s)	68, 371
AgsI	TTSAA	4 cut(s)	32, 61, 533, 707
AjnI	CCWGG	2 cut(s)	109, 211
AluBI	AGCT	3 cut(s)	163, 360, 552
AluI	AGCT	3 cut(s)	163, 360, 552
Alw26I	GTCTC	2 cut(s)	37, 729
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	572
AsiGI	ACCGGT	2 cut(s)	68, 371
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	466
AsuHPI	GGTGA	3 cut(s)	285, 328, 569
AvaII	GGWCC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	561
BccI	CCATC	4 cut(s)	180, 304, 437, 539
BciT130I	CCWGG	2 cut(s)	111, 213
BcoDI	GTCTC	2 cut(s)	37, 729
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	111, 213
Bme18I	GGWCC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	466
BmiI	GGNNCC	1 cut(s)	467
BmrFI	CCNGG	2 cut(s)	111, 213
BmsI	GCATC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpuEI	CTTGAG	3 cut(s)	123, 179, 255
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	109, 212
BsaWI	WCCGGW	2 cut(s)	68, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	589
Bse118I	RCCGGY	2 cut(s)	68, 371
Bse1I	ACTGG	2 cut(s)	536, 736
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	111, 213
BseDI	CCNNGG	2 cut(s)	109, 212
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	1 cut(s)	589
BseNI	ACTGG	2 cut(s)	536, 736
BseRI	GAGGAG	3 cut(s)	366, 588, 591
BseXI	GCAGC	1 cut(s)	561
BshFI	GGCC	1 cut(s)	114
BshTI	ACCGGT	2 cut(s)	68, 371
BsiSI	CCGG	2 cut(s)	69, 372
BslFI	GGGAC	1 cut(s)	479
BslI	CCNNNNNNNGG	1 cut(s)	589
BsmAI	GTCTC	2 cut(s)	37, 729
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	479
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	427, 640
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	467
BspMI	ACCTGC	1 cut(s)	72
BspQI	GCTCTTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	68, 371
BsrI	ACTGG	2 cut(s)	536, 736
BssAI	RCCGGY	2 cut(s)	68, 371
BssECI	CCNNGG	2 cut(s)	109, 212
BssMI	GATC	2 cut(s)	427, 640
Bst2UI	CCWGG	2 cut(s)	111, 213
Bst4CI	ACNGT	5 cut(s)	317, 422, 527, 609, 624
Bst6I	CTCTTC	2 cut(s)	138, 275
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	430, 643
BstMAI	GTCTC	2 cut(s)	37, 729
BstMBI	GATC	2 cut(s)	427, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 398
BstNI	CCWGG	2 cut(s)	111, 213
BstSCI	CCNGG	2 cut(s)	109, 211
BstV1I	GCAGC	1 cut(s)	561
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	427, 605, 620
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	2 cut(s)	68, 371
Cfr13I	GGNCC	1 cut(s)	466
CspAI	ACCGGT	2 cut(s)	68, 371
CviAII	CATG	2 cut(s)	579, 612
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	2 cut(s)	429, 642
DpnII	GATC	2 cut(s)	427, 640
DraI	TTTAAA	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	138, 275
EarI	CTCTTC	2 cut(s)	138, 275
Eco47I	GGWCC	1 cut(s)	466
EcoRII	CCWGG	2 cut(s)	109, 211
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	2 cut(s)	582, 615
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	479
FatI	CATG	2 cut(s)	578, 611
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	550
Fsp4HI	GCNGC	1 cut(s)	550
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	550
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	69, 372
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	582, 615
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	250, 617
HpaII	CCGG	2 cut(s)	69, 372
HphI	GGTGA	3 cut(s)	285, 328, 569
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188III	TCNNGA	5 cut(s)	140, 192, 272, 431, 644
Hpy8I	GTNNAC	1 cut(s)	523
HpyAV	CCTTC	3 cut(s)	26, 259, 341
HpyCH4III	ACNGT	5 cut(s)	317, 422, 527, 609, 624
HpyCH4V	TGCA	3 cut(s)	81, 106, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 398
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	582, 615
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	427, 640
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	353
Lsp1109I	GCAGC	1 cut(s)	561
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	207, 291, 680
MalI	GATC	2 cut(s)	429, 642
MboI	GATC	2 cut(s)	427, 640
MboII	GAAGA	9 cut(s)	155, 274, 289, 292, 300, 418, 452, 572, 650
MluCI	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	336
MseI	TTAA	5 cut(s)	86, 96, 234, 587, 627
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	2 cut(s)	69, 372
MspR9I	CCNGG	2 cut(s)	111, 213
MvaI	CCWGG	2 cut(s)	111, 213
MwoI	GCNNNNNNNGC	2 cut(s)	154, 398
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	2 cut(s)	427, 640
NlaIII	CATG	2 cut(s)	582, 615
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	291, 680
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	617
PinAI	ACCGGT	2 cut(s)	68, 371
PkrI	GCNGC	1 cut(s)	551
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	109, 211
PspGI	CCWGG	2 cut(s)	109, 211
PspN4I	GGNNCC	1 cut(s)	467
PspPI	GGNCC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	5 cut(s)	86, 96, 234, 587, 627
SatI	GCNGC	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	427, 640
Sau96I	GGNCC	1 cut(s)	466
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	111, 213
SetI	ASST	8 cut(s)	29, 37, 58, 86, 92, 165, 362, 554
SfaNI	GCATC	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	3 cut(s)	138, 158, 270
SmoI	CTYRAG	3 cut(s)	138, 158, 270
Sse9I	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	109, 211
TaaI	ACNGT	5 cut(s)	317, 422, 527, 609, 624
TasI	AATT	6 cut(s)	97, 195, 238, 508, 572, 689
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	5 cut(s)	86, 96, 234, 587, 627
Tru9I	TTAA	5 cut(s)	86, 96, 234, 587, 627
TscAI	CASTG	3 cut(s)	427, 612, 627
TseFI	GTSAC	2 cut(s)	291, 680
TseI	GCWGC	1 cut(s)	549
Tsp45I	GTSAC	2 cut(s)	291, 680
TspDTI	ATGAA	5 cut(s)	309, 360, 384, 567, 651
TspRI	CASTG	3 cut(s)	427, 612, 627
VpaK11BI	GGWCC	1 cut(s)	466
XapI	RAATTY	1 cut(s)	572
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.