Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8084432.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 587

Gene Structure 587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8084432.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 587 bp

cccatcccctcgagtaaaatcagcccttaccgcatagtcattgtcatccggcttgtgattctggccttctttttccatttccgtatcttaactccagcctatgatgcttttcccttgtggctcatatctgtgatttgtgagatatggtttgcactctcatggatacttgaccagttccctaaatggcaacccatcaaccgggaaacttacttggaccgcctaaccttgaggtttgagcgtgagggtgagcctaacaccctagctccagttgatgtctatgtgagttcagtggaccctctcaaggagcctccaatcattactgcaaacacagttttatccattttatctgttgactacccggttgacaaggtgtgctgttatgtttcggatgatggtgcttcaatgctcctctttgatgcactagctgagactgctgagtttgcaagaagatgggtgccattttgcaaaaagcacaccattgagccaagggctcctgagttctatttctctcagaagattgattacttgaaggacaaggttcatccaaactttgtcaaggagcgcagagccatgaaggtgagcaaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

195

Amino Acids

22.73

Weight (kDa)

8.09

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AciI	CCGC	2 cut(s)	31, 217
AfiI	CCNNNNNNNGG	2 cut(s)	198, 301
AgsI	TTSAA	2 cut(s)	402, 529
AluBI	AGCT	2 cut(s)	263, 425
AluI	AGCT	2 cut(s)	263, 425
Alw26I	GTCTC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	214, 292
AsuC2I	CCSGG	2 cut(s)	200, 359
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	214, 292
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	493
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BccI	CCATC	4 cut(s)	11, 200, 386, 444
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	2 cut(s)	200, 359
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	260, 422
BfuI	GTATCC	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	200, 359
Bme18I	GGWCC	2 cut(s)	214, 292
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	214, 292
BmiI	GGNNCC	4 cut(s)	294, 306, 456, 492
BmrFI	CCNGG	2 cut(s)	200, 359
BmsI	GCATC	2 cut(s)	94, 406
BpmI	CTGGAG	2 cut(s)	78, 249
BpuEI	CTTGAG	2 cut(s)	247, 284
BpuMI	CCSGG	2 cut(s)	200, 359
BsaJI	CCNNGG	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 301
Bse1I	ACTGG	2 cut(s)	172, 266
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	3 cut(s)	45, 394, 541
BseLI	CCNNNNNNNGG	2 cut(s)	198, 301
BseMII	CTCAG	4 cut(s)	417, 426, 486, 524
BseNI	ACTGG	2 cut(s)	172, 266
BseRI	GAGGAG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	49, 199, 359
BslI	CCNNNNNNNGG	2 cut(s)	198, 301
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	493
BspACI	CCGC	2 cut(s)	31, 217
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	4 cut(s)	418, 427, 487, 523
BspLI	GGNNCC	4 cut(s)	294, 306, 456, 492
BspT107I	GGYRCC	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	172, 266
BssECI	CCNNGG	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	331
BstDEI	CTNAG	4 cut(s)	426, 435, 495, 510
BstF5I	GGATG	3 cut(s)	45, 394, 541
BstHHI	GCGC	1 cut(s)	564
BstMAI	GTCTC	1 cut(s)	422
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 104, 431, 440
BstSCI	CCNGG	2 cut(s)	198, 357
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	45, 394, 541
BtsIMutI	CAGTG	1 cut(s)	294
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	214, 292
CviAII	CATG	2 cut(s)	159, 571
DdeI	CTNAG	4 cut(s)	426, 435, 495, 510
Eco130I	CCWWGG	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	214, 292
Eco88I	CYCGRG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	485
EcoT38I	GRGCYC	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	2 cut(s)	162, 574
FaiI	YATR	8 cut(s)	35, 102, 125, 145, 160, 279, 381, 572
FatI	CATG	2 cut(s)	158, 570
FokI	GGATG	3 cut(s)	32, 401, 528
FriOI	GRGCYC	1 cut(s)	493
FspBI	CTAG	2 cut(s)	260, 422
GlaI	GCGC	1 cut(s)	563
GsuI	CTGGAG	2 cut(s)	78, 249
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	3 cut(s)	49, 199, 359
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	2 cut(s)	162, 574
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	2 cut(s)	352, 364
HindII	GTYRAC	2 cut(s)	352, 364
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	3 cut(s)	49, 199, 359
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	292, 352, 364
Hpy188I	TCNGA	2 cut(s)	388, 513
Hpy188III	TCNNGA	1 cut(s)	494
Hpy8I	GTNNAC	3 cut(s)	292, 352, 364
HpyAV	CCTTC	3 cut(s)	76, 523, 568
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	5 cut(s)	152, 323, 419, 443, 465
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 104, 431, 440
HpyF3I	CTNAG	4 cut(s)	426, 435, 495, 510
Hsp92II	CATG	2 cut(s)	162, 574
HspAI	GCGC	1 cut(s)	562
LmnI	GCTCC	5 cut(s)	268, 304, 411, 496, 559
LpnPI	CCDG	8 cut(s)	47, 62, 108, 185, 212, 279, 372, 507
LweI	GCATC	2 cut(s)	94, 406
MaeI	CTAG	2 cut(s)	260, 422
MboII	GAAGA	2 cut(s)	459, 526
MhlI	GDGCHC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	19, 222, 235, 306, 318, 419
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	3 cut(s)	128, 157, 575
MspI	CCGG	3 cut(s)	49, 199, 359
MspR9I	CCNGG	2 cut(s)	200, 359
MwoI	GCNNNNNNNGC	4 cut(s)	30, 104, 431, 440
NciI	CCSGG	2 cut(s)	200, 359
NlaIII	CATG	2 cut(s)	162, 574
NlaIV	GGNNCC	4 cut(s)	294, 306, 456, 492
PaeR7I	CTCGAG	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	58
PspN4I	GGNNCC	4 cut(s)	294, 306, 456, 492
PspPI	GGNCC	2 cut(s)	214, 292
PspXI	VCTCGAGB	1 cut(s)	10
RseI	CAYNNNNRTG	3 cut(s)	128, 157, 575
SaqAI	TTAA	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	214, 292
ScrFI	CCNGG	2 cut(s)	200, 359
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	7 cut(s)	227, 233, 265, 372, 427, 540, 579
SfaNI	GCATC	2 cut(s)	94, 406
Sfr274I	CTCGAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	214, 292
SlaI	CTCGAG	1 cut(s)	10
SmiMI	CAYNNNNRTG	3 cut(s)	128, 157, 575
SmlI	CTYRAG	3 cut(s)	10, 226, 299
SmoI	CTYRAG	3 cut(s)	10, 226, 299
SsiI	CCGC	2 cut(s)	31, 217
SspMI	CTAG	2 cut(s)	260, 422
StyD4I	CCNGG	2 cut(s)	198, 357
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	294
TspDTI	ATGAA	2 cut(s)	530, 587
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	214, 292
XhoI	CTCGAG	1 cut(s)	10
XspI	CTAG	2 cut(s)	260, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.