Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003799.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

3742 .. 4631

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003799.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgggggagcgaggggtcagttcaccattgttcgagacgaagagggccaaggggatagttctgtataggctttttgctgcgtctattttcgtgggtatatgtttcatctgggtttacaggttgagtcatgtaccaaaagctggagaagatggaaggtttggttggatgggtctgctgggtgctgagttatggttcgggttttactggctcttcactcaagcctgccgctggaaccgcgtgtatcggcacaccttcagggacaggctctcggagagatatgaggatgagttgccgggagtggacatattcgtgtgcacggcagacccaactatagagccgccgacgatggtgataaacactgttttatcagtaatggcttatgattacccaccggagaagctcagcgtgtatctatccgatgatggcggatccgaacttacatgttatgctctattggaagctgctgagtttgctaagcattggataccatattgcaagaagtacaatgtggagccaaggtcacctgctgcttattttgcctcactagcttctgataatgcaggggatttcactctcattaaggtactagttgagtctttatctcttataatagggtctaaatcaaatcttagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

211

Amino Acids

23.89

Weight (kDa)

5.67

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
AarI	CACCTGC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	1 cut(s)	237
AciI	CCGC	4 cut(s)	226, 235, 338, 426
AclWI	GGATC	2 cut(s)	423, 436
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	3 cut(s)	132, 503, 585
AfiI	CCNNNNNNNGG	2 cut(s)	140, 228
AflIII	ACRYGT	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	5 cut(s)	140, 400, 461, 548, 633
AluI	AGCT	5 cut(s)	140, 400, 461, 548, 633
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	29
Alw44I	GTGCAC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	423, 436
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	77, 461, 527
AspS9I	GGNCC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	3 cut(s)	15, 361, 513
BaeGI	GKGCMC	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	3 cut(s)	64, 448, 514
BccI	CCATC	4 cut(s)	143, 160, 340, 416
BceAI	ACGGC	1 cut(s)	333
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	29
BcuI	ACTAGT	1 cut(s)	586
BfaI	CTAG	3 cut(s)	545, 587, 634
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	532
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	5 cut(s)	78, 226, 338, 462, 528
BlpI	GCTNAGC	2 cut(s)	401, 474
BlsI	GCNGC	5 cut(s)	79, 227, 339, 463, 529
Bme1390I	CCNGG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	3 cut(s)	233, 430, 513
BmrFI	CCNGG	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	162
Bpu1102I	GCTNAGC	2 cut(s)	401, 474
BpuEI	CTTGAG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	48, 515
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 228
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	48, 515
BseGI	GGATG	2 cut(s)	171, 289
BseLI	CCNNNNNNNGG	2 cut(s)	140, 228
BseMII	CTCAG	3 cut(s)	174, 415, 456
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	64, 448, 514
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	293, 392
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	140, 228
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	428
Bsp1720I	GCTNAGC	2 cut(s)	401, 474
BspACI	CCGC	4 cut(s)	226, 235, 338, 426
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	175, 414, 457
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	233, 430, 513
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	423, 436
BspQI	GCTCTTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	48, 515
BssMI	GATC	1 cut(s)	428
BssT1I	CCWWGG	2 cut(s)	48, 515
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	35, 215
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	5 cut(s)	183, 401, 465, 474, 629
BstEII	GGTNACC	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	171, 289
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	431
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	4 cut(s)	234, 470, 536, 545
BstNSI	RCATGY	1 cut(s)	444
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	64, 448, 514
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	171, 289
BtsIMutI	CAGTG	1 cut(s)	357
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	3 cut(s)	131, 502, 584
CviAII	CATG	2 cut(s)	128, 441
CviQI	GTAC	3 cut(s)	131, 502, 584
DdeI	CTNAG	5 cut(s)	183, 401, 465, 474, 629
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	35, 215
EarI	CTCTTC	2 cut(s)	35, 215
EciI	GGCGGA	1 cut(s)	441
Eco130I	CCWWGG	2 cut(s)	48, 515
Eco57I	CTGAAG	1 cut(s)	238
Eco91I	GGTNACC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	48, 515
ErhI	CCWWGG	2 cut(s)	48, 515
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	2 cut(s)	131, 444
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	2 cut(s)	127, 440
Fnu4HI	GCNGC	5 cut(s)	78, 226, 338, 462, 528
FokI	GGATG	2 cut(s)	178, 296
Fsp4HI	GCNGC	5 cut(s)	78, 226, 338, 462, 528
FspBI	CTAG	3 cut(s)	545, 587, 634
GluI	GCNGC	5 cut(s)	78, 226, 338, 462, 528
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	293, 392
HgaI	GACGC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	131, 444
HinfI	GANTC	2 cut(s)	124, 593
HpaII	CCGG	2 cut(s)	293, 392
HphI	GGTGA	3 cut(s)	15, 361, 513
Hpy166II	GTNNAC	4 cut(s)	23, 115, 301, 315
Hpy188I	TCNGA	4 cut(s)	271, 418, 433, 553
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	4 cut(s)	23, 115, 301, 315
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	147, 262
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	315, 495, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	234, 470, 536, 545
HpyF3I	CTNAG	5 cut(s)	183, 401, 465, 474, 629
Hsp92II	CATG	2 cut(s)	131, 444
Kzo9I	GATC	1 cut(s)	428
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	7, 511
Lsp1109I	GCAGC	3 cut(s)	64, 448, 514
MaeI	CTAG	3 cut(s)	545, 587, 634
MaeIII	GTNAC	1 cut(s)	519
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	3 cut(s)	52, 158, 202
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	317
MlyI	GAGTC	2 cut(s)	133, 602
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	5, 36, 274, 550
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	2 cut(s)	293, 392
MspR9I	CCNGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	234, 470, 536, 545
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	2 cut(s)	131, 444
NlaIV	GGNNCC	3 cut(s)	233, 430, 513
NmuCI	GTSAC	1 cut(s)	519
NspI	RCATGY	1 cut(s)	444
PaqCI	CACCTGC	1 cut(s)	532
PciI	ACATGT	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	215
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	5 cut(s)	79, 227, 339, 463, 529
PleI	GAGTC	2 cut(s)	132, 601
PpsI	GAGTC	2 cut(s)	132, 601
PscI	ACATGT	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	608
PspEI	GGTNACC	1 cut(s)	519
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	3 cut(s)	233, 430, 513
PspPI	GGNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	3 cut(s)	132, 503, 585
RsaNI	GTAC	3 cut(s)	131, 502, 584
RseI	CAYNNNNRTG	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	5 cut(s)	78, 226, 338, 462, 528
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	2 cut(s)	133, 602
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	317
SfcI	CTRYAG	1 cut(s)	330
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SpeI	ACTAGT	1 cut(s)	586
SsiI	CCGC	4 cut(s)	226, 235, 338, 426
SspMI	CTAG	3 cut(s)	545, 587, 634
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	2 cut(s)	48, 515
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	33
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	2 cut(s)	228, 340
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	519
TseI	GCWGC	3 cut(s)	77, 461, 527
Tsp45I	GTSAC	1 cut(s)	519
TspDTI	ATGAA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	140
VneI	GTGCAC	1 cut(s)	313
XceI	RCATGY	1 cut(s)	444
XspI	CTAG	3 cut(s)	545, 587, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.