Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000184.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

13292 .. 14676

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000184.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

atggggaagaaggaaggaggagaaggagaagcgagtagtagtagtactactactactcttccattgtttgagagcaaaacagcaagatttagaggtgtttatagggtttttgcctcaactatatttgtgggtgtgtgtttgatatgggtgtacagactaataaacatcccgaaagctggagagagagggagatgggcgtggattggtatgctcatggctgagttcttgtttggtttgtattggatcatcactcagtctgttcgctggagtgtcacttatcgtcaacctctcaagaatagactctcacagagatatgaggagaagttgccgggtgttgatgtttttatatgcactgcggacccgaaaatggagccgccaagtttggtgattaacactgtgttatcagtcctgtcctgcaattttccatctgagaagttgagtgtttatctctcggatgatggcggttcacagtttactttctatgctcttttggaggcgtctcggttctcgaagtattggatacccttttgcaagaagttcaaggttgaaccaagggcaccggaggcttactttaccctgcattctgacgttaatgacaccaaatatggtccagaatggtttgataccaagaaactttatgaagaaatgaaaaatcggatcgattctgttgttgaaagtgggaagataccagaagaaacaaggaatcaacacaaagggttctcagaatggaaccttaaagtagcaaagaatgatcatcactcaattgtgcagattataactgatggaagagacacaaatgccgtggacaacgatggatgccgattaccaactattgtctacatgtcaagagaaaagagaccccaacagccacacaacttcaaagctggagccatgaatgcactggttagctttagcttcctcacttgccaatgcattgttgacactaagttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

317

Amino Acids

36.32

Weight (kDa)

8.83

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	837
AciI	CCGC	3 cut(s)	356, 374, 462
AclWI	GGATC	2 cut(s)	251, 665
AcyI	GRCGYC	1 cut(s)	497
AfaI	GTAC	2 cut(s)	46, 152
AfiI	CCNNNNNNNGG	2 cut(s)	176, 367
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	4 cut(s)	541, 548, 674, 880
AluBI	AGCT	4 cut(s)	176, 884, 909, 915
AluI	AGCT	4 cut(s)	176, 884, 909, 915
Alw26I	GTCTC	3 cut(s)	504, 783, 850
AlwI	GGATC	2 cut(s)	251, 665
AspS9I	GGNCC	2 cut(s)	358, 608
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	358, 608
BaeGI	GKGCMC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	556
BccI	CCATC	5 cut(s)	186, 433, 452, 776, 806
BceAI	ACGGC	1 cut(s)	785
BciVI	GTATCC	1 cut(s)	513
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	504, 783, 850
BfuI	GTATCC	1 cut(s)	513
BisI	GCNGC	1 cut(s)	374
BlsI	GCNGC	1 cut(s)	375
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	358, 608
BmgT120I	GGNCC	2 cut(s)	358, 608
BmiI	GGNNCC	5 cut(s)	360, 372, 558, 731, 889
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	806
BpmI	CTGGAG	3 cut(s)	198, 286, 906
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	660
BsaHI	GRCGYC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	850
BsaJI	CCNNGG	2 cut(s)	551, 801
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 367
Bse1I	ACTGG	1 cut(s)	906
BseCI	ATCGAT	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	551, 801
BseGI	GGATG	3 cut(s)	165, 460, 821
BseLI	CCNNNNNNNGG	2 cut(s)	176, 367
BseMII	CTCAG	4 cut(s)	210, 266, 420, 735
BseNI	ACTGG	1 cut(s)	906
BseRI	GAGGAG	2 cut(s)	33, 332
BseSI	GKGCMC	1 cut(s)	559
BsgI	GTGCAG	1 cut(s)	788
BshNI	GGYRCC	1 cut(s)	556
BshVI	ATCGAT	1 cut(s)	660
BsiSI	CCGG	2 cut(s)	329, 560
BslI	CCNNNNNNNGG	2 cut(s)	176, 367
BsmAI	GTCTC	3 cut(s)	504, 783, 850
BsmBI	CGTCTC	1 cut(s)	504
BsmI	GAATGC	2 cut(s)	580, 901
Bso31I	GGTCTC	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	243, 657, 751
BspACI	CCGC	3 cut(s)	356, 374, 462
BspCNI	CTCAG	4 cut(s)	211, 265, 421, 734
BspDI	ATCGAT	1 cut(s)	660
BspLI	GGNNCC	5 cut(s)	360, 372, 558, 731, 889
BspPI	GGATC	2 cut(s)	251, 665
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	850
BsrGI	TGTACA	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	906
BssECI	CCNNGG	2 cut(s)	551, 801
BssMI	GATC	3 cut(s)	243, 657, 751
BssNI	GRCGYC	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	397, 471
Bst6I	CTCTTC	2 cut(s)	63, 781
BstACI	GRCGYC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	150
BstDEI	CTNAG	5 cut(s)	219, 252, 429, 721, 945
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	3 cut(s)	165, 460, 821
BstKTI	GATC	3 cut(s)	246, 660, 754
BstMAI	GTCTC	3 cut(s)	504, 783, 850
BstMBI	GATC	3 cut(s)	243, 657, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 896
BstNSI	RCATGY	1 cut(s)	844
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	801
BtsCI	GGATG	3 cut(s)	165, 460, 821
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	351, 393, 899
Cfr13I	GGNCC	2 cut(s)	358, 608
ClaI	ATCGAT	1 cut(s)	660
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	45, 151
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	3 cut(s)	214, 841, 892
CviJI	RGCY	9 cut(s)	176, 218, 373, 566, 868, 884, 890, 909, 915
CviKI_1	RGCY	9 cut(s)	176, 218, 373, 566, 868, 884, 890, 909, 915
CviQI	GTAC	2 cut(s)	45, 151
DdeI	CTNAG	5 cut(s)	219, 252, 429, 721, 945
DpnI	GATC	3 cut(s)	245, 659, 753
DpnII	GATC	3 cut(s)	243, 657, 751
Eam1104I	CTCTTC	2 cut(s)	63, 781
EarI	CTCTTC	2 cut(s)	63, 781
Eco130I	CCWWGG	1 cut(s)	551
Eco31I	GGTCTC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	358, 608
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	935
ErhI	CCWWGG	1 cut(s)	551
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	3 cut(s)	217, 844, 895
FatI	CATG	3 cut(s)	213, 840, 891
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	837
Fnu4HI	GCNGC	1 cut(s)	374
FokI	GGATG	3 cut(s)	152, 467, 828
Fsp4HI	GCNGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	374
GsuI	CTGGAG	3 cut(s)	198, 286, 906
HapII	CCGG	2 cut(s)	329, 560
HgaI	GACGC	1 cut(s)	486
Hin1I	GRCGYC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	217, 844, 895
HincII	GTYRAC	2 cut(s)	284, 940
HindII	GTYRAC	2 cut(s)	284, 940
HinfI	GANTC	3 cut(s)	300, 662, 703
HpaII	CCGG	2 cut(s)	329, 560
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	7 cut(s)	151, 284, 467, 474, 805, 838, 940
Hpy188I	TCNGA	5 cut(s)	430, 454, 586, 657, 724
Hpy188III	TCNNGA	5 cut(s)	169, 292, 508, 611, 846
Hpy8I	GTNNAC	7 cut(s)	151, 284, 467, 474, 805, 838, 940
HpyAV	CCTTC	3 cut(s)	4, 8, 17
HpyCH4III	ACNGT	2 cut(s)	397, 471
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	7 cut(s)	351, 417, 531, 580, 769, 899, 933
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 896
HpyF3I	CTNAG	5 cut(s)	219, 252, 429, 721, 945
HpySE526I	ACGT	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	217, 844, 895
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	243, 657, 751
LmnI	GCTCC	2 cut(s)	370, 887
LweI	GCATC	1 cut(s)	806
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	245, 659, 753
MboI	GATC	3 cut(s)	243, 657, 751
MboII	GAAGA	6 cut(s)	19, 50, 653, 694, 704, 798
MfeI	CAATTG	1 cut(s)	762
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	2 cut(s)	418, 762
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	9 cut(s)	11, 86, 124, 179, 297, 310, 487, 556, 929
Mph1103I	ATGCAT	1 cut(s)	935
MseI	TTAA	4 cut(s)	390, 591, 735, 952
MspI	CCGG	2 cut(s)	329, 560
MspR9I	CCNGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	580, 901
MwoI	GCNNNNNNNGC	2 cut(s)	563, 896
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	243, 657, 751
NlaIII	CATG	3 cut(s)	217, 844, 895
NlaIV	GGNNCC	5 cut(s)	360, 372, 558, 731, 889
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	935
NspI	RCATGY	1 cut(s)	844
PciI	ACATGT	1 cut(s)	840
PctI	GAATGC	2 cut(s)	580, 901
PfeI	GAWTC	2 cut(s)	662, 703
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	776
PspN4I	GGNNCC	5 cut(s)	360, 372, 558, 731, 889
PspPI	GGNCC	2 cut(s)	358, 608
RsaI	GTAC	2 cut(s)	46, 152
RsaNI	GTAC	2 cut(s)	45, 151
SaqAI	TTAA	4 cut(s)	390, 591, 735, 952
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	3 cut(s)	243, 657, 751
Sau96I	GGNCC	2 cut(s)	358, 608
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	559
SetI	ASST	9 cut(s)	97, 178, 289, 546, 591, 735, 886, 911, 917
SfaNI	GCATC	1 cut(s)	806
SinI	GGWCC	2 cut(s)	358, 608
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	418, 762
SsiI	CCGC	3 cut(s)	356, 374, 462
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	2 cut(s)	397, 471
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	509, 660
TasI	AATT	2 cut(s)	418, 762
TatI	WGTACW	2 cut(s)	44, 150
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	2 cut(s)	662, 703
Tru1I	TTAA	4 cut(s)	390, 591, 735, 952
Tru9I	TTAA	4 cut(s)	390, 591, 735, 952
TscAI	CASTG	3 cut(s)	358, 400, 906
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	654, 662, 908
TspRI	CASTG	3 cut(s)	358, 400, 906
VpaK11BI	GGWCC	2 cut(s)	358, 608
XceI	RCATGY	1 cut(s)	844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	898
XmiI	GTMKAC	1 cut(s)	837
ZrmI	AGTACT	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.