Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

85250780 .. 85255720

Gene Structure 4941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG503900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGCATGAGTTACAAAGTGGAGGACCTAGTCCCGGGTCCTTCCCTATCATTAAACCATTTCAAATAGAGAAAGCTCGAGCAATTAGAGTTGGCTCAAAAATGGGAGAGGAAAGACATTTACCACTGTTTGAGACAACGAAGGCAAAGGGAATAGTCCTCTATAGGTTTTCTGCGGTGTCTGTTTCTGTTGGCATATGTTTGATTTGGGTTTATAGAGTGACTCATATACCAAAAGCTGGAGAAGATGGAAGATTTGGTTGGATGCTGTTGTTCGCCGCTGAGTTATGGTTTGCTTTTTACTGGTTCGTCACTCAAGCCCTTCGGTGGAGCCGCATCAACCGGCATACCTTCAAGGACAGGCTCTCTGAAAGATATGAGAATGAGTTGCCGGGGGTGGACATATTCGTGTGCACCGCGGATCCGATCATAGAGCCACCGATTATGGTGATGAACACTGTTCTATCGGTCATGGCTTATGACTATCCGCCGGAGAAGCTCAGCGTGTATCTCTCCGACGATGGCGGCTCAGAATTTACGTACTATGCTTTTTTAGAAGCTGCTGAGTTTGCCAAGCGCTGGATACCCTATTGCAAGAAGTACAATGTGGAGCCAAGATCACCCGCTGCTTATTTTGTCTCGACAGCTTCTGATGATCAAAGTCAGAATCAGAAACAAGAAGGAGATTTAGCTGTAATTAAGAAATTATATGAGGACATGGCGACCAAAATTGGAAATGCAGTGAAGCTAGGCCGCATTTCAGAAGAAGTGAGATCAAAACATAAAGGCTTTTCTCGATGGGACTCATATTCATCAAAACGTGACCATGAAACCATTCTTCAAATAGTAATTGATGGGAGAGACCCAAATGCAAGAGATGTTGAAGGGTGTGTGTTGCCAACTTTGGTGTATTTGGCTCGGGAGAAGAGACCCCAGATTCACCATAACTTCAAAGCTGGTGCTATGAATGCTCTGATTAGGGTATCGTCAAATATAAGCAATGGGAAGTTGCTTCTTAATGTAGACTGTGACATGTATTCAAACAACTCGAAGGCCATAAGGGATGCACTCTGCTTCTTAATGGATGAAGAACAAGGCCATGAGATTGCATATGTACAGTTCCCACAGAATTTCGATAACCTTACTAAGAATGAATTATACGCTTCATTACGAGTAATTGCCGAGGTGGAAGCCCATGGTCTGGATAATTATTGGGGGACATTATATATTGGGAGTGGATGTTTTCACAGAAGAGAAACTCTTTGTGGGAAGAAATTCAGCAAGGTAAATAAGAGTGAGATGAAATGGGAGGACAAAAAAGGTGAAGAAATTGGCATTCATGAATTAGAAGAAAGTTCAAAAAGTCTTGCGAGTTGTACATTTGAAGAGAACACACAATGGGGAAAAGAGATGGGGGTGAAATATGGGTGTCCGGTTGAAGATGTGTTAACAGGACTATTAATCCAATGCCGAGGATGGAAATCAGTGTATTGCAATCCAACAAGGAAAGCTTTCTTAGGATTAAATGCAACCACACTGCTTCAGGTACTTGTGCAGCATAAGAGATGGTCGGAAGGCAACCTTCAAATTACGCTGTCTAAGTACAGTGTTGTATGGTATGGCCATGGAAAGATTAGTTTAGGCCATCAACTTGGATACCTTCGCTACAACTTGTGGGCTGCTAATTGCTGGGCAACACTAATTTACTCAACTCTTCCTTCACTTTACCTCCTTAGAGGAACGTCCTTATTTCCTCAGATTTCAAGTCGATGGATTATACCATTTGCATATGTTCTAATTGCTAAGAACATTGGAAGCTTTGTGGAGTATCTATGGTGTGGAGGCACGAGCTTAGGTTGGTGGAATGACCAACGTATCTGGCTTTACCAGAGAACAACCTCATACTTATTTGCCTTCATCGACACCATTGTACACTACCTCGGATACACGGATTCAGCATTTGTAATAACAGCCAAGGTGGCCGATGAAGACGTGTCCGAACGATATGAGAAAGAGATCATGGAATTTGGGGGTTCGTCTCCGATGTTTACCGTGCTGGCAACACTTGCATTGCTCAATCTGTACTGCTTTGCCTGGTTTGTGAAGGCAGTAATCACCGGAACAAAGGTTATGATTGCAGACGTTTATGAGACAATGTTCTTACAGATTCTTCTATGTGTGGTTTTGATTTTAATTAACCTACCGTTGTACGAAGCCCTATACGTAAGGAAGGACAAGGGGAAGCTGCCGAGCTCTGTAGCATTTAAGTCGATGGCATTTGCTGGATTTGCTTGCATATGTTTTAAATTTCTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

771

Amino Acids

87.98

Weight (kDa)

8.11

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	132 - 432	2e-90	Cellulose synthase
Cellulose_synt	PF03552	454 - 757	1.2e-38	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	236, 576, 1198
AccI	GTMKAC	1 cut(s)	1020
AccII	CGCG	1 cut(s)	416
AciI	CCGC	9 cut(s)	173, 276, 331, 414, 416, 485, 522, 621, 751
AclWI	GGATC	2 cut(s)	413, 426
AcoI	YGGCCR	2 cut(s)	1618, 1977
AcsI	RAATTY	5 cut(s)	530, 1126, 1271, 2021, 2303
AcuI	CTGAAG	1 cut(s)	1523
AfaI	GTAC	9 cut(s)	539, 599, 1113, 1375, 1545, 1601, 1929, 2081, 2207
AfeI	AGCGCT	1 cut(s)	575
AfiI	CCNNNNNNNGG	5 cut(s)	32, 236, 324, 576, 1198
AflIII	ACRYGT	2 cut(s)	1029, 1989
AjiI	CACGTC	1 cut(s)	1990
AjnI	CCWGG	1 cut(s)	2090
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
Alw21I	GWGCWC	2 cut(s)	413, 2252
Alw26I	GTCTC	6 cut(s)	125, 640, 852, 919, 2040, 2141
Alw44I	GTGCAC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	413, 426
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	3 cut(s)	32, 75, 915
Aor51HI	AGCGCT	1 cut(s)	575
AoxI	GGCC	6 cut(s)	748, 1050, 1093, 1618, 1639, 1977
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	5 cut(s)	557, 623, 1552, 1676, 2242
ApoI	RAATTY	5 cut(s)	530, 1126, 1271, 2021, 2303
AseI	ATTAAT	1 cut(s)	1457
Asp700I	GAANNNNTTC	3 cut(s)	831, 1271, 1508
AspLEI	GCGC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	23, 36
AsuC2I	CCSGG	3 cut(s)	33, 34, 390
AsuHPI	GGTGA	6 cut(s)	457, 609, 929, 1331, 1426, 2104
AvaI	CYCGRG	3 cut(s)	32, 75, 915
AvaII	GGWCC	2 cut(s)	23, 36
BaeGI	GKGCMC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	1855, 1888
BalI	TGGCCA	1 cut(s)	1620
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	2252
BauI	CACGAG	1 cut(s)	1843
BbsI	GAAGAC	1 cut(s)	1992
Bbv12I	GWGCWC	2 cut(s)	413, 2252
BbvI	GCAGC	5 cut(s)	544, 610, 1564, 1663, 2229
BcgI	CGANNNNNNTGC	2 cut(s)	2247, 2281
BciT130I	CCWGG	1 cut(s)	2092
BciVI	GTATCC	3 cut(s)	573, 1646, 1934
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	3 cut(s)	33, 34, 390
BcoDI	GTCTC	6 cut(s)	125, 640, 852, 919, 2040, 2141
BfaI	CTAG	2 cut(s)	27, 746
BfmI	CTRYAG	2 cut(s)	160, 2253
BfoI	RGCGCY	1 cut(s)	577
BfuI	GTATCC	3 cut(s)	573, 1646, 1934
BglI	GCCNNNNNGGC	1 cut(s)	1976
BisI	GCNGC	9 cut(s)	276, 331, 523, 558, 624, 751, 1553, 1677, 2243
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	9 cut(s)	277, 332, 524, 559, 625, 752, 1554, 1678, 2244
Bme1390I	CCNGG	4 cut(s)	33, 34, 390, 2092
Bme18I	GGWCC	2 cut(s)	23, 36
BmeT110I	CYCGRG	3 cut(s)	32, 75, 915
BmgBI	CACGTC	1 cut(s)	1990
BmgT120I	GGNCC	2 cut(s)	23, 36
BmiI	GGNNCC	4 cut(s)	37, 329, 420, 609
BmrFI	CCNGG	4 cut(s)	33, 34, 390, 2092
BmsI	GCATC	3 cut(s)	252, 342, 1051
BpiI	GAAGAC	1 cut(s)	1992
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	1849
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	297
BpuMI	CCSGG	3 cut(s)	33, 34, 390
BsaAI	YACGTR	2 cut(s)	537, 2221
BsaBI	GATNNNNATC	1 cut(s)	1477
BsaI	GGTCTC	2 cut(s)	852, 919
BsaJI	CCNNGG	9 cut(s)	32, 389, 414, 1179, 1192, 1468, 1621, 1936, 1971
BsaWI	WCCGGW	2 cut(s)	1429, 2114
BsaXI	ACNNNNNCTCC	4 cut(s)	1222, 1252, 1710, 1740
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 236, 324, 576, 1198
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	1003, 2066
Bse8I	GATNNNNATC	1 cut(s)	1477
BseBI	CCWGG	1 cut(s)	2092
BseDI	CCNNGG	9 cut(s)	32, 389, 414, 1179, 1192, 1468, 1621, 1936, 1971
BseGI	GGATG	5 cut(s)	267, 1066, 1087, 1241, 1478
BseJI	GATNNNNATC	1 cut(s)	1477
BseLI	CCNNNNNNNGG	5 cut(s)	32, 236, 324, 576, 1198
BseMI	GCAATG	2 cut(s)	1003, 2066
BseMII	CTCAG	5 cut(s)	270, 511, 540, 552, 1766
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	5 cut(s)	544, 610, 1564, 1663, 2229
BseYI	CCCAGC	1 cut(s)	1686
BsgI	GTGCAG	1 cut(s)	1571
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	6 cut(s)	750, 1052, 1095, 1620, 1641, 1979
BsiHKAI	GWGCWC	2 cut(s)	413, 2252
BsiHKCI	CYCGRG	3 cut(s)	32, 75, 915
BsiSI	CCGG	6 cut(s)	33, 340, 389, 488, 1430, 2115
BslFI	GGGAC	3 cut(s)	15, 812, 1228
BslI	CCNNNNNNNGG	5 cut(s)	32, 236, 324, 576, 1198
BsmAI	GTCTC	6 cut(s)	125, 640, 852, 919, 2040, 2141
BsmBI	CGTCTC	1 cut(s)	2040
BsmFI	GGGAC	3 cut(s)	15, 812, 1228
BsmI	GAATGC	2 cut(s)	970, 1332
BsnI	GGCC	6 cut(s)	750, 1052, 1095, 1620, 1641, 1979
Bso31I	GGTCTC	2 cut(s)	852, 919
BsoBI	CYCGRG	3 cut(s)	32, 75, 915
Bsp1286I	GDGCHC	2 cut(s)	413, 2252
Bsp1407I	TGTACA	3 cut(s)	1111, 1373, 1927
Bsp143I	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	2 cut(s)	1192, 1621
BspACI	CCGC	9 cut(s)	173, 276, 331, 414, 416, 485, 522, 621, 751
BspANI	GGCC	6 cut(s)	750, 1052, 1095, 1620, 1641, 1979
BspCNI	CTCAG	5 cut(s)	271, 510, 539, 553, 1765
BspFNI	CGCG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	1336
BspLI	GGNNCC	4 cut(s)	37, 329, 420, 609
BspPI	GGATC	2 cut(s)	413, 426
BspTNI	GGTCTC	2 cut(s)	852, 919
BsrDI	GCAATG	2 cut(s)	1003, 2066
BsrFI	RCCGGY	1 cut(s)	339
BsrGI	TGTACA	3 cut(s)	1111, 1373, 1927
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	9 cut(s)	32, 389, 414, 1179, 1192, 1468, 1621, 1936, 1971
BssMI	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
BssSI	CACGAG	1 cut(s)	1843
BssT1I	CCWWGG	3 cut(s)	1192, 1621, 1971
Bst2BI	CACGAG	1 cut(s)	1843
Bst2UI	CCWGG	1 cut(s)	2092
Bst4CI	ACNGT	7 cut(s)	126, 457, 1025, 1116, 1604, 2050, 2202
Bst6I	CTCTTC	4 cut(s)	917, 1243, 1377, 1716
BstAPI	GCANNNNNTGC	1 cut(s)	2063
BstAUI	TGTACA	3 cut(s)	1111, 1373, 1927
BstBAI	YACGTR	2 cut(s)	537, 2221
BstC8I	GCNNGC	2 cut(s)	2055, 2290
BstDSI	CCRYGG	3 cut(s)	414, 1192, 1621
BstF5I	GGATG	5 cut(s)	267, 1066, 1087, 1241, 1478
BstFNI	CGCG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	577
BstHHI	GCGC	1 cut(s)	576
BstKTI	GATC	6 cut(s)	421, 426, 617, 655, 773, 2016
BstMAI	GTCTC	6 cut(s)	125, 640, 852, 919, 2040, 2141
BstMBI	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
BstMWI	GCNNNNNNNGC	6 cut(s)	493, 566, 965, 1976, 2063, 2285
BstNI	CCWGG	1 cut(s)	2092
BstNSI	RCATGY	1 cut(s)	1033
BstSCI	CCNGG	4 cut(s)	31, 32, 388, 2090
BstSFI	CTRYAG	2 cut(s)	160, 2253
BstSLI	GKGCMC	1 cut(s)	413
BstSNI	TACGTA	2 cut(s)	537, 2221
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	5 cut(s)	544, 610, 1564, 1663, 2229
BstV2I	GAAGAC	1 cut(s)	1992
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	1649
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	3 cut(s)	573, 1646, 1934
BsuRI	GGCC	6 cut(s)	750, 1052, 1095, 1620, 1641, 1979
BtgI	CCRYGG	3 cut(s)	414, 1192, 1621
BtrI	CACGTC	1 cut(s)	1990
BtsCI	GGATG	5 cut(s)	267, 1066, 1087, 1241, 1478
BtsI	GCAGTG	2 cut(s)	744, 1532
BtsIMutI	CAGTG	6 cut(s)	122, 453, 744, 1488, 1532, 1609
Cac8I	GCNNGC	2 cut(s)	2055, 2290
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	1336
CfoI	GCGC	1 cut(s)	576
Cfr10I	RCCGGY	1 cut(s)	339
Cfr13I	GGNCC	2 cut(s)	23, 36
Cfr42I	CCGCGG	1 cut(s)	417
Cfr9I	CCCGGG	1 cut(s)	32
Csp6I	GTAC	9 cut(s)	538, 598, 1112, 1374, 1544, 1600, 1928, 2080, 2206
CviQI	GTAC	9 cut(s)	538, 598, 1112, 1374, 1544, 1600, 1928, 2080, 2206
DpnI	GATC	6 cut(s)	420, 425, 616, 654, 772, 2015
DpnII	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
DraI	TTTAAA	1 cut(s)	2302
EaeI	YGGCCR	2 cut(s)	1618, 1977
Eam1104I	CTCTTC	4 cut(s)	917, 1243, 1377, 1716
EarI	CTCTTC	4 cut(s)	917, 1243, 1377, 1716
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	2250
Eco105I	TACGTA	2 cut(s)	537, 2221
Eco130I	CCWWGG	3 cut(s)	1192, 1621, 1971
Eco24I	GRGCYC	1 cut(s)	2252
Eco31I	GGTCTC	2 cut(s)	852, 919
Eco47I	GGWCC	2 cut(s)	23, 36
Eco47III	AGCGCT	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	2250
Eco57I	CTGAAG	1 cut(s)	1523
Eco88I	CYCGRG	3 cut(s)	32, 75, 915
EcoICRI	GAGCTC	1 cut(s)	2250
EcoO109I	RGGNCCY	2 cut(s)	23, 36
EcoRII	CCWGG	1 cut(s)	2090
EcoT14I	CCWWGG	3 cut(s)	1192, 1621, 1971
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	2252
ErhI	CCWWGG	3 cut(s)	1192, 1621, 1971
Esp3I	CGTCTC	1 cut(s)	2040
FalI	AAGNNNNNCTT	4 cut(s)	1492, 1524, 1563, 1595
FaqI	GGGAC	3 cut(s)	15, 812, 1228
FauI	CCCGC	1 cut(s)	628
FauNDI	CATATG	4 cut(s)	194, 1108, 1786, 2294
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	1020
Fnu4HI	GCNGC	9 cut(s)	276, 331, 523, 558, 624, 751, 1553, 1677, 2243
FokI	GGATG	5 cut(s)	274, 1073, 1094, 1248, 1485
FriOI	GRGCYC	1 cut(s)	2252
Fsp4HI	GCNGC	9 cut(s)	276, 331, 523, 558, 624, 751, 1553, 1677, 2243
FspBI	CTAG	2 cut(s)	27, 746
GlaI	GCGC	1 cut(s)	575
GluI	GCNGC	9 cut(s)	276, 331, 523, 558, 624, 751, 1553, 1677, 2243
GsaI	CCCAGC	1 cut(s)	1690
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	577
HaeIII	GGCC	6 cut(s)	750, 1052, 1095, 1620, 1641, 1979
HapII	CCGG	6 cut(s)	33, 340, 389, 488, 1430, 2115
HhaI	GCGC	1 cut(s)	576
Hin6I	GCGC	1 cut(s)	574
HinP1I	GCGC	1 cut(s)	574
HincII	GTYRAC	1 cut(s)	1446
HindII	GTYRAC	1 cut(s)	1446
HindIII	AAGCTT	2 cut(s)	1506, 1813
HinfI	GANTC	6 cut(s)	220, 664, 800, 934, 1949, 2164
HpaI	GTTAAC	1 cut(s)	1446
HpaII	CCGG	6 cut(s)	33, 340, 389, 488, 1430, 2115
HphI	GGTGA	6 cut(s)	457, 609, 929, 1331, 1426, 2104
Hpy166II	GTNNAC	6 cut(s)	397, 411, 1021, 1446, 1930, 2046
Hpy188III	TCNNGA	5 cut(s)	637, 792, 917, 1199, 1337
Hpy8I	GTNNAC	6 cut(s)	397, 411, 1021, 1446, 1930, 2046
Hpy99I	CGWCG	1 cut(s)	518
HpyCH4III	ACNGT	7 cut(s)	126, 457, 1025, 1116, 1604, 2050, 2202
HpyCH4IV	ACGT	7 cut(s)	536, 817, 1739, 1870, 1989, 2139, 2220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	493, 566, 965, 1976, 2063, 2285
HpySE526I	ACGT	7 cut(s)	536, 817, 1739, 1870, 1989, 2139, 2220
HspAI	GCGC	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	652
KspAI	GTTAAC	1 cut(s)	1446
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
LmnI	GCTCC	2 cut(s)	327, 607
Lsp1109I	GCAGC	5 cut(s)	544, 610, 1564, 1663, 2229
LweI	GCATC	3 cut(s)	252, 342, 1051
MaeI	CTAG	2 cut(s)	27, 746
MaeII	ACGT	7 cut(s)	536, 817, 1739, 1870, 1989, 2139, 2220
MaeIII	GTNAC	5 cut(s)	9, 217, 307, 818, 1025
MalI	GATC	6 cut(s)	420, 425, 616, 654, 772, 2015
MboI	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	413, 2252
MlsI	TGGCCA	1 cut(s)	1620
MluNI	TGGCCA	1 cut(s)	1620
MlyI	GAGTC	2 cut(s)	214, 794
MmeI	TCCRAC	4 cut(s)	239, 537, 1520, 1548
Mox20I	TGGCCA	1 cut(s)	1620
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	3 cut(s)	831, 1271, 1508
MscI	TGGCCA	1 cut(s)	1620
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	1620
MspA1I	CMGCKG	3 cut(s)	278, 416, 623
MspI	CCGG	6 cut(s)	33, 340, 389, 488, 1430, 2115
MspR9I	CCNGG	4 cut(s)	33, 34, 390, 2092
Mva1269I	GAATGC	2 cut(s)	970, 1332
MvaI	CCWGG	1 cut(s)	2092
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	6 cut(s)	493, 566, 965, 1976, 2063, 2285
NciI	CCSGG	3 cut(s)	33, 34, 390
NcoI	CCATGG	2 cut(s)	1192, 1621
NdeI	CATATG	4 cut(s)	194, 1108, 1786, 2294
NdeII	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
NlaIV	GGNNCC	4 cut(s)	37, 329, 420, 609
NmeAIII	GCCGAG	3 cut(s)	1204, 1493, 2271
NmuCI	GTSAC	4 cut(s)	217, 307, 818, 1025
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	1033
PacI	TTAATTAA	1 cut(s)	2193
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	1336
PciI	ACATGT	1 cut(s)	1029
PctI	GAATGC	2 cut(s)	970, 1332
PdmI	GAANNNNTTC	3 cut(s)	831, 1271, 1508
PfeI	GAWTC	4 cut(s)	664, 934, 1949, 2164
PflFI	GACNNNGTC	1 cut(s)	27
PflMI	CCANNNNNTGG	3 cut(s)	236, 576, 1198
PkrI	GCNGC	9 cut(s)	277, 332, 524, 559, 625, 752, 1554, 1678, 2244
PleI	GAGTC	2 cut(s)	214, 794
PpsI	GAGTC	2 cut(s)	214, 794
Ppu21I	YACGTR	2 cut(s)	537, 2221
PpuMI	RGGWCCY	2 cut(s)	23, 36
PscI	ACATGT	1 cut(s)	1029
PshBI	ATTAAT	1 cut(s)	1457
Psp124BI	GAGCTC	1 cut(s)	2252
Psp5II	RGGWCCY	2 cut(s)	23, 36
Psp6I	CCWGG	1 cut(s)	2090
PspFI	CCCAGC	1 cut(s)	1686
PspGI	CCWGG	1 cut(s)	2090
PspN4I	GGNNCC	4 cut(s)	37, 329, 420, 609
PspPI	GGNCC	2 cut(s)	23, 36
PspPPI	RGGWCCY	2 cut(s)	23, 36
PspXI	VCTCGAGB	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	27
RsaI	GTAC	9 cut(s)	539, 599, 1113, 1375, 1545, 1601, 1929, 2081, 2207
RsaNI	GTAC	9 cut(s)	538, 598, 1112, 1374, 1544, 1600, 1928, 2080, 2206
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	2252
SacII	CCGCGG	1 cut(s)	417
SatI	GCNGC	9 cut(s)	276, 331, 523, 558, 624, 751, 1553, 1677, 2243
Sau3AI	GATC	6 cut(s)	418, 423, 614, 652, 770, 2013
Sau96I	GGNCC	2 cut(s)	23, 36
SchI	GAGTC	2 cut(s)	214, 794
ScrFI	CCNGG	4 cut(s)	33, 34, 390, 2092
SduI	GDGCHC	2 cut(s)	413, 2252
SfaNI	GCATC	3 cut(s)	252, 342, 1051
SfcI	CTRYAG	2 cut(s)	160, 2253
Sfr274I	CTCGAG	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	417
SgrBI	CCGCGG	1 cut(s)	417
SinI	GGWCC	2 cut(s)	23, 36
SlaI	CTCGAG	1 cut(s)	75
SmaI	CCCGGG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	2 cut(s)	75, 312
SmoI	CTYRAG	2 cut(s)	75, 312
SnaBI	TACGTA	2 cut(s)	537, 2221
SsiI	CCGC	9 cut(s)	173, 276, 331, 414, 416, 485, 522, 621, 751
SspMI	CTAG	2 cut(s)	27, 746
SstI	GAGCTC	1 cut(s)	2252
StyD4I	CCNGG	4 cut(s)	31, 32, 388, 2090
StyI	CCWWGG	3 cut(s)	1192, 1621, 1971
TaaI	ACNGT	7 cut(s)	126, 457, 1025, 1116, 1604, 2050, 2202
TaiI	ACGT	7 cut(s)	539, 820, 1742, 1873, 1992, 2142, 2223
TaqI	TCGA	8 cut(s)	76, 638, 793, 1046, 1131, 1765, 1917, 2267
TaqII	GACCGA	1 cut(s)	454
TatI	WGTACW	6 cut(s)	597, 1111, 1373, 1599, 1927, 2079
TauI	GCSGC	4 cut(s)	278, 333, 525, 753
TfiI	GAWTC	4 cut(s)	664, 934, 1949, 2164
TscAI	CASTG	6 cut(s)	129, 460, 744, 1488, 1539, 1609
TseFI	GTSAC	4 cut(s)	217, 307, 818, 1025
TseI	GCWGC	5 cut(s)	557, 623, 1552, 1676, 2242
Tsp45I	GTSAC	4 cut(s)	217, 307, 818, 1025
TspGWI	ACGGA	1 cut(s)	1961
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	6 cut(s)	129, 460, 744, 1488, 1539, 1609
Tth111I	GACNNNGTC	1 cut(s)	27
Van91I	CCANNNNNTGG	3 cut(s)	236, 576, 1198
VneI	GTGCAC	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	23, 36
VspI	ATTAAT	1 cut(s)	1457
XapI	RAATTY	5 cut(s)	530, 1126, 1271, 2021, 2303
XceI	RCATGY	1 cut(s)	1033
XhoI	CTCGAG	1 cut(s)	75
XmaI	CCCGGG	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	1020
XmnI	GAANNNNTTC	3 cut(s)	831, 1271, 1508
XspI	CTAG	2 cut(s)	27, 746
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.