Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

7240420 .. 7243192

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTTTCATCTGGGTTTACAGGTTGAGTCATATACCAAAAAGCTGGAGAAGATGGAAGGTTTGGTTGGATGGGTCTGCTGGGTGCTGAGTTATGGTTCGGGTTTTACTGGCTCTTCACTCAAGCCTGCCGGTGGAACCGCGTGTATCGGCACACCTTCAGGGACAGGCTCTCGGAGAGATATGAGGATGAGTTGCCGGGAGTGGGACATATTCGTGTGCACGGCAGACCCAACTATAGAGCCGCCGATGATGGTGATAAACACTGTTTTATCAGTAATGGCTTATGATTACCCACCGGAGAAGCTCAGCGTGTATCTATCCGATGATGGCGGATCCGAACTTACATGTTATGCTCTATTGGAAGCTGCTGAGTTTGCTAAGCATTGGATACCATATTGCAAGAAGTACAATGTGGAGCCAAGGTCACCTGCTGCTTATTTTACCTCACTAGCTTCTGATAATGAAGGGGATTTCATTCTCATTAAGAAATTATACGAAGACATGGCGAATAAAATCGAAATTGCAGTGAGGTTAGGCAGCATTTCTGAAGAAGTACGATCAAAACACAAAGGCTTTTCTCAGTGGGATTCGTATTCATCTCCACGTGACCATGACACCATTCTACAAATAGTAATTGATGGGGAGAGATCCAAATGCAAGAGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

222

Amino Acids

24.85

Weight (kDa)

5.64

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	69 - 215	4.2e-34	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	138, 242, 330
AclWI	GGATC	3 cut(s)	327, 340, 642
AcuI	CTGAAG	2 cut(s)	141, 567
AcvI	CACGTG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	407, 555
AfiI	CCNNNNNNNGG	2 cut(s)	131, 202
AflIII	ACRYGT	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	4 cut(s)	43, 304, 365, 452
AluI	AGCT	4 cut(s)	43, 304, 365, 452
Alw21I	GWGCWC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	3 cut(s)	327, 340, 642
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	365, 431, 537
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	265, 417
BaeGI	GKGCMC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	332
BbrPI	CACGTG	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	352, 418, 549
BccI	CCATC	5 cut(s)	46, 63, 244, 320, 632
BceAI	ACGGC	1 cut(s)	237
BciVI	GTATCC	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	197
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	436
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	4 cut(s)	242, 366, 432, 538
BlpI	GCTNAGC	2 cut(s)	305, 378
BlsI	GCNGC	4 cut(s)	243, 367, 433, 539
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	136, 334, 417
BmrFI	CCNGG	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	504
BpmI	CTGGAG	1 cut(s)	65
Bpu1102I	GCTNAGC	2 cut(s)	305, 378
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	295
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 202
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	74, 192
BseLI	CCNNNNNNNGG	2 cut(s)	131, 202
BseMII	CTCAG	4 cut(s)	77, 319, 360, 593
BseNI	ACTGG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	352, 418, 549
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	129, 196, 296
BslFI	GGGAC	2 cut(s)	175, 218
BslI	CCNNNNNNNGG	2 cut(s)	131, 202
BsmFI	GGGAC	2 cut(s)	175, 218
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	332, 557, 647
Bsp1720I	GCTNAGC	2 cut(s)	305, 378
BspACI	CCGC	3 cut(s)	138, 242, 330
BspCNI	CTCAG	4 cut(s)	78, 318, 361, 592
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	3 cut(s)	136, 334, 417
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	3 cut(s)	327, 340, 642
BspQI	GCTCTTC	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	332, 557, 647
BssT1I	CCWWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	605
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	5 cut(s)	86, 305, 369, 378, 579
BstEII	GGTNACC	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	74, 192
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	335, 560, 650
BstMBI	GATC	3 cut(s)	332, 557, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	352, 418, 549
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	2 cut(s)	332, 647
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	2 cut(s)	332, 647
BsuI	GTATCC	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	74, 192
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	261, 531, 587
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	406, 554
CviAII	CATG	3 cut(s)	345, 502, 611
CviQI	GTAC	2 cut(s)	406, 554
DdeI	CTNAG	5 cut(s)	86, 305, 369, 378, 579
DpnI	GATC	3 cut(s)	334, 559, 649
DpnII	GATC	3 cut(s)	332, 557, 647
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	345
Eco130I	CCWWGG	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	141, 567
Eco72I	CACGTG	1 cut(s)	605
Eco91I	GGTNACC	1 cut(s)	423
EcoO65I	GGTNACC	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	348, 505, 614
FaqI	GGGAC	2 cut(s)	175, 218
FatI	CATG	3 cut(s)	344, 501, 610
Fnu4HI	GCNGC	4 cut(s)	242, 366, 432, 538
FokI	GGATG	2 cut(s)	81, 199
Fsp4HI	GCNGC	4 cut(s)	242, 366, 432, 538
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	4 cut(s)	242, 366, 432, 538
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	65
HapII	CCGG	3 cut(s)	129, 196, 296
Hin1II	CATG	3 cut(s)	348, 505, 614
HinfI	GANTC	2 cut(s)	26, 587
HpaII	CCGG	3 cut(s)	129, 196, 296
HphI	GGTGA	2 cut(s)	265, 417
Hpy166II	GTNNAC	2 cut(s)	17, 219
Hpy188I	TCNGA	5 cut(s)	174, 322, 337, 457, 547
Hpy8I	GTNNAC	2 cut(s)	17, 219
HpyAV	CCTTC	3 cut(s)	50, 165, 458
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	219, 399, 524, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	5 cut(s)	86, 305, 369, 378, 579
HpySE526I	ACGT	1 cut(s)	604
Hsp92II	CATG	3 cut(s)	348, 505, 614
Kzo9I	GATC	3 cut(s)	332, 557, 647
LguI	GCTCTTC	1 cut(s)	118
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	352, 418, 549
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	604
MaeIII	GTNAC	2 cut(s)	423, 605
MalI	GATC	3 cut(s)	334, 559, 649
MboI	GATC	3 cut(s)	332, 557, 647
MboII	GAAGA	4 cut(s)	61, 105, 509, 560
MflI	RGATCY	2 cut(s)	332, 647
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	3 cut(s)	488, 519, 633
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	3 cut(s)	177, 454, 522
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	3 cut(s)	129, 196, 296
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	3 cut(s)	332, 557, 647
NlaIII	CATG	3 cut(s)	348, 505, 614
NlaIV	GGNNCC	3 cut(s)	136, 334, 417
NmuCI	GTSAC	2 cut(s)	423, 605
NspI	RCATGY	1 cut(s)	348
PaqCI	CACCTGC	1 cut(s)	436
PciI	ACATGT	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	587
PkrI	GCNGC	4 cut(s)	243, 367, 433, 539
PleI	GAGTC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	605
PmlI	CACGTG	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	605
PscI	ACATGT	1 cut(s)	344
PspCI	CACGTG	1 cut(s)	605
PspEI	GGTNACC	1 cut(s)	423
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	3 cut(s)	136, 334, 417
PsuI	RGATCY	2 cut(s)	332, 647
RsaI	GTAC	2 cut(s)	407, 555
RsaNI	GTAC	2 cut(s)	406, 554
RseI	CAYNNNNRTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	4 cut(s)	242, 366, 432, 538
Sau3AI	GATC	3 cut(s)	332, 557, 647
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	488, 519, 633
SsiI	CCGC	3 cut(s)	138, 242, 330
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	607
TaqI	TCGA	1 cut(s)	516
TasI	AATT	3 cut(s)	488, 519, 633
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	587
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	3 cut(s)	268, 531, 587
TseFI	GTSAC	2 cut(s)	423, 605
TseI	GCWGC	3 cut(s)	365, 431, 537
Tsp45I	GTSAC	2 cut(s)	423, 605
TspDTI	ATGAA	3 cut(s)	463, 477, 585
TspRI	CASTG	3 cut(s)	268, 531, 587
VneI	GTGCAC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	348
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.