Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

7245336 .. 7247891

Gene Structure 2556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGACATGGGAAGATACACTTTGGTGCCCAAATGGGGATATTGCCTCTACCTTCTATGGGCTCCAGTTTCATTCCCAACTTTGTATTATGCACTTGTTCCACCTCTTTGCTTGCTCCATGGCATTCCCTTGTTCCCCAAGGTGTCAAGCCTATGGTTCCTAGCATTTGCTTATGTTTTTGTAGCAAAGAATGCATACAGCCTAGTTGAATTTGTGATGTGTGGGGGTACACTCAAAGCATGGTGGAACCTACAACGAATGTGGCTGATCCGACGAATCACTTCGTACTTCTTTGCCTTCTTCGACACCATCAAGAGGCAATTGGGGCTATCTGAAACACACTTTGCCCTCACCAATAAGGTTGTCACCGAGGATGTGTTAAAGAGGTATGAGCAGGAGGTTTTGGAATTTGGAAGCTCAAGCATTATGTACACTGTAATGGCAACATCGGCATTGCTGAACTTGGTGAGCCTAGTTTGGGGGACAAAGCGGGTTGTGATGAATTTAGAGTTGAAGGCCTTAGACCAGTTCATTAGTCAAGTTATTCTTTGTGGCATATTGGTTTTGATCAATATACCAGTGTATGAAGCTCTCTTCTTGCGCAGTGACAAGGGCCCATATACCATCCTCTGTCATGTACAAGTCTGTTTTTGTGCTCACGTTGGCATGCTTGATACCTATATGCTAGGAACGACGTTTGCCCAAAGATTGAAGAATAACCATCATCATAATATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

246

Amino Acids

28.34

Weight (kDa)

8.92

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	13 - 211	5.1e-12	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	1 cut(s)	262
AcsI	RAATTY	3 cut(s)	209, 407, 502
AfaI	GTAC	4 cut(s)	229, 287, 431, 639
AfiI	CCNNNNNNNGG	4 cut(s)	35, 58, 315, 478
AgsI	TTSAA	3 cut(s)	209, 514, 712
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	2 cut(s)	417, 590
AluI	AGCT	2 cut(s)	417, 590
Alw21I	GWGCWC	1 cut(s)	658
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	2 cut(s)	516, 613
ApaI	GGGCCC	1 cut(s)	617
ApoI	RAATTY	3 cut(s)	209, 407, 502
Asp700I	GAANNNNTTC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	613, 614
AsuHPI	GGTGA	3 cut(s)	343, 358, 478
BaeGI	GKGCMC	2 cut(s)	30, 617
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	64, 617
Bbv12I	GWGCWC	1 cut(s)	658
BccI	CCATC	3 cut(s)	317, 632, 729
BclI	TGATCA	1 cut(s)	567
BfaI	CTAG	5 cut(s)	161, 203, 473, 686, 739
BmgT120I	GGNCC	2 cut(s)	613, 614
BmiI	GGNNCC	5 cut(s)	27, 63, 158, 248, 615
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	118, 138, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 58, 315, 478
Bse1I	ACTGG	3 cut(s)	65, 526, 578
Bse3DI	GCAATG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	118, 138, 369
BseGI	GGATG	2 cut(s)	379, 624
BseLI	CCNNNNNNNGG	4 cut(s)	35, 58, 315, 478
BseMI	GCAATG	1 cut(s)	452
BseNI	ACTGG	3 cut(s)	65, 526, 578
BseSI	GKGCMC	2 cut(s)	30, 617
BshFI	GGCC	2 cut(s)	518, 615
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	658
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	35, 58, 315, 478
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	2 cut(s)	123, 196
BsnI	GGCC	2 cut(s)	518, 615
Bsp120I	GGGCCC	1 cut(s)	613
Bsp1286I	GDGCHC	4 cut(s)	30, 64, 617, 658
Bsp1407I	TGTACA	2 cut(s)	429, 637
Bsp143I	GATC	2 cut(s)	267, 567
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	2 cut(s)	518, 615
BspLI	GGNNCC	5 cut(s)	27, 63, 158, 248, 615
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	452
BsrGI	TGTACA	2 cut(s)	429, 637
BsrI	ACTGG	3 cut(s)	65, 526, 578
BssECI	CCNNGG	3 cut(s)	118, 138, 369
BssMI	GATC	2 cut(s)	267, 567
BssT1I	CCWWGG	2 cut(s)	118, 138
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	599
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstAUI	TGTACA	2 cut(s)	429, 637
BstC8I	GCNNGC	2 cut(s)	113, 668
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	379, 624
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	2 cut(s)	270, 570
BstMBI	GATC	2 cut(s)	267, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 325, 449
BstNSI	RCATGY	1 cut(s)	670
BstSLI	GKGCMC	2 cut(s)	30, 617
BsuRI	GGCC	2 cut(s)	518, 615
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	379, 624
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	3 cut(s)	432, 585, 610
Cac8I	GCNNGC	2 cut(s)	113, 668
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	613, 614
Csp6I	GTAC	4 cut(s)	228, 286, 430, 638
CspCI	CAANNNNNGTGG	2 cut(s)	242, 277
CviAII	CATG	5 cut(s)	7, 119, 240, 635, 667
CviQI	GTAC	4 cut(s)	228, 286, 430, 638
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	2 cut(s)	269, 569
DpnII	GATC	2 cut(s)	267, 567
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
Eco130I	CCWWGG	2 cut(s)	118, 138
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	2 cut(s)	64, 617
EcoO109I	RGGNCCY	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	118, 138
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	2 cut(s)	64, 617
ErhI	CCWWGG	2 cut(s)	118, 138
FaeI	CATG	5 cut(s)	10, 122, 243, 638, 670
FalI	AAGNNNNNCTT	3 cut(s)	36, 531, 563
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	5 cut(s)	6, 118, 239, 634, 666
FauI	CCCGC	1 cut(s)	483
FbaI	TGATCA	1 cut(s)	567
FokI	GGATG	2 cut(s)	386, 611
FriOI	GRGCYC	2 cut(s)	64, 617
FspBI	CTAG	5 cut(s)	161, 203, 473, 686, 739
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	518, 615
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	5 cut(s)	10, 122, 243, 638, 670
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HinfI	GANTC	1 cut(s)	276
HphI	GGTGA	3 cut(s)	343, 358, 478
Hpy166II	GTNNAC	2 cut(s)	230, 432
Hpy188I	TCNGA	2 cut(s)	272, 334
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	2 cut(s)	230, 432
Hpy99I	CGWCG	2 cut(s)	276, 697
HpyAV	CCTTC	3 cut(s)	62, 307, 508
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	2 cut(s)	660, 695
HpyCH4V	TGCA	2 cut(s)	92, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 325, 449
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	2 cut(s)	660, 695
Hsp92II	CATG	5 cut(s)	10, 122, 243, 638, 670
HspAI	GCGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	267, 567
LmnI	GCTCC	2 cut(s)	67, 120
LpnPI	CCDG	4 cut(s)	78, 380, 539, 591
MaeI	CTAG	5 cut(s)	161, 203, 473, 686, 739
MaeII	ACGT	2 cut(s)	660, 695
MaeIII	GTNAC	2 cut(s)	364, 605
MalI	GATC	2 cut(s)	269, 569
MboI	GATC	2 cut(s)	267, 567
MboII	GAAGA	4 cut(s)	24, 292, 586, 724
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	4 cut(s)	30, 64, 617, 658
MluCI	AATT	4 cut(s)	209, 320, 407, 502
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	8 cut(s)	56, 114, 309, 359, 364, 378, 391, 638
Mph1103I	ATGCAT	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	280
MseI	TTAA	1 cut(s)	380
MslI	CAYNNNNRTG	2 cut(s)	23, 437
MunI	CAATTG	1 cut(s)	320
Mva1269I	GAATGC	2 cut(s)	123, 196
MwoI	GCNNNNNNNGC	3 cut(s)	191, 325, 449
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	2 cut(s)	267, 567
NlaIII	CATG	5 cut(s)	10, 122, 243, 638, 670
NlaIV	GGNNCC	5 cut(s)	27, 63, 158, 248, 615
NmuCI	GTSAC	2 cut(s)	364, 605
NsbI	TGCGCA	1 cut(s)	602
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	670
OliI	CACNNNNGTG	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	518
PctI	GAATGC	2 cut(s)	123, 196
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	276
PspN4I	GGNNCC	5 cut(s)	27, 63, 158, 248, 615
PspOMI	GGGCCC	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	613, 614
RsaI	GTAC	4 cut(s)	229, 287, 431, 639
RsaNI	GTAC	4 cut(s)	228, 286, 430, 638
RseI	CAYNNNNRTG	2 cut(s)	23, 437
SaqAI	TTAA	1 cut(s)	380
Sau3AI	GATC	2 cut(s)	267, 567
Sau96I	GGNCC	2 cut(s)	613, 614
SduI	GDGCHC	4 cut(s)	30, 64, 617, 658
SmiMI	CAYNNNNRTG	2 cut(s)	23, 437
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SphI	GCATGC	1 cut(s)	670
Sse9I	AATT	4 cut(s)	209, 320, 407, 502
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	5 cut(s)	161, 203, 473, 686, 739
StuI	AGGCCT	1 cut(s)	518
StyI	CCWWGG	2 cut(s)	118, 138
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	2 cut(s)	663, 698
TaqI	TCGA	1 cut(s)	303
TasI	AATT	4 cut(s)	209, 320, 407, 502
TatI	WGTACW	2 cut(s)	429, 637
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	3 cut(s)	439, 585, 610
TseFI	GTSAC	2 cut(s)	364, 605
Tsp45I	GTSAC	2 cut(s)	364, 605
TspDTI	ATGAA	4 cut(s)	60, 515, 520, 600
TspRI	CASTG	3 cut(s)	439, 585, 610
XapI	RAATTY	3 cut(s)	209, 407, 502
XceI	RCATGY	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	5 cut(s)	161, 203, 473, 686, 739
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.