Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

17465851 .. 17466351

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGATTATCTGCGAAATATGGTTCGCCTTCTCTTGGATTCTTGATCAGACTCCAAAGTTTTTCCCCATTAATAGTCAGATCGATCTTGAAGTCCTCCACGACAAGTTTGACATGCCATCACCATCCAATCCAACGGGCCGGTCTGACCTCCCTGGCATTGATTTCTATGTATCGACTGCTGATCCTGACAAAGAGCCACCTCTCACCACTGCCAATACCATCCTTTCAATCCTAGCCGTTGATTACCCGGTTGAAAAGATAGCATGCTACATCTCTGATGATGGAGGTGCCCTCCTCACCTTCGAGGCAATGGCGGAGGCTGCTAGTTTCGCGGACTTGTGGGTCCCCTTCTGCCGGAAGCACGACATTGAGCCGAGGAATCCTGACAGTTACTTCGCGTTGAAAGTTGACCCAACAAAGAACAAGAGTAGTCTGGACTTTGTGAAGGATAGGAGGAAGATCGATCCTGCGTATGATGAGTTCAAGGTCGAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000030 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019187 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704 GO:0051753 GO:0070085 GO:0071554 GO:0071669 GO:0097502

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-RING_4

Protein Analysis

167

Amino Acids

18.77

Weight (kDa)

4.45

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	54 - 164	1.5e-58	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	290
AccII	CGCG	2 cut(s)	335, 401
AciI	CCGC	2 cut(s)	317, 335
AclWI	GGATC	2 cut(s)	179, 461
AfiI	CCNNNNNNNGG	2 cut(s)	36, 357
AgsI	TTSAA	5 cut(s)	92, 231, 257, 406, 487
AjnI	CCWGG	1 cut(s)	154
AlwI	GGATC	2 cut(s)	179, 461
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	139, 346
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	114, 199, 292
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	4 cut(s)	127, 133, 230, 278
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	156
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	251
BfaI	CTAG	3 cut(s)	236, 327, 499
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	2 cut(s)	156, 251
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	139, 346
BmiI	GGNNCC	3 cut(s)	292, 347, 348
BmrFI	CCNGG	2 cut(s)	156, 251
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	2 cut(s)	84, 465
BsaJI	CCNNGG	2 cut(s)	154, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 357
Bse118I	RCCGGY	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	156
BseCI	ATCGAT	2 cut(s)	84, 465
BseDI	CCNNGG	2 cut(s)	154, 377
BseGI	GGATG	2 cut(s)	125, 222
BseLI	CCNNNNNNNGG	2 cut(s)	36, 357
BseMI	GCAATG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	2 cut(s)	335, 401
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	1 cut(s)	290
BshVI	ATCGAT	2 cut(s)	84, 465
BsiSI	CCGG	3 cut(s)	142, 251, 358
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	36, 357
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
BspACI	CCGC	2 cut(s)	317, 335
BspANI	GGCC	1 cut(s)	141
BspDI	ATCGAT	2 cut(s)	84, 465
BspFNI	CGCG	2 cut(s)	335, 401
BspLI	GGNNCC	3 cut(s)	292, 347, 348
BspPI	GGATC	2 cut(s)	179, 461
BspT107I	GGYRCC	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	2 cut(s)	154, 377
BssMI	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	125, 222
BstFNI	CGCG	2 cut(s)	335, 401
BstKTI	GATC	6 cut(s)	49, 84, 88, 187, 465, 469
BstMBI	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 332
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	2 cut(s)	118, 270
BstSCI	CCNGG	2 cut(s)	154, 249
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	2 cut(s)	335, 401
BstV1I	GCAGC	1 cut(s)	310
Bsu15I	ATCGAT	2 cut(s)	84, 465
BsuRI	GGCC	1 cut(s)	141
BsuTUI	ATCGAT	2 cut(s)	84, 465
BtsCI	GGATG	2 cut(s)	125, 222
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	139, 346
ClaI	ATCGAT	2 cut(s)	84, 465
CviAII	CATG	2 cut(s)	115, 267
CviJI	RGCY	5 cut(s)	141, 199, 239, 323, 376
CviKI_1	RGCY	5 cut(s)	141, 199, 239, 323, 376
DpnI	GATC	6 cut(s)	48, 83, 87, 186, 464, 468
DpnII	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	118, 270
FaiI	YATR	5 cut(s)	22, 116, 171, 268, 477
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	2 cut(s)	114, 266
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	2 cut(s)	112, 209
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	3 cut(s)	236, 327, 499
GluI	GCNGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	3 cut(s)	142, 251, 358
Hin1II	CATG	2 cut(s)	118, 270
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HinfI	GANTC	3 cut(s)	40, 52, 382
HpaII	CCGG	3 cut(s)	142, 251, 358
HphI	GGTGA	3 cut(s)	114, 199, 292
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	4 cut(s)	51, 81, 148, 280
Hpy188III	TCNNGA	5 cut(s)	44, 89, 188, 386, 437
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	4 cut(s)	40, 313, 361, 442
HpyCH4III	ACNGT	1 cut(s)	392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 332
Hsp92II	CATG	2 cut(s)	118, 270
KflI	GGGWCCC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
LpnPI	CCDG	9 cut(s)	141, 155, 168, 201, 264, 371, 399, 422, 483
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	3 cut(s)	236, 327, 499
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	6 cut(s)	48, 83, 87, 186, 464, 468
MboI	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
MboII	GAAGA	1 cut(s)	472
MhlI	GDGCHC	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	1 cut(s)	72
MspI	CCGG	3 cut(s)	142, 251, 358
MspR9I	CCNGG	2 cut(s)	156, 251
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	335, 401
MwoI	GCNNNNNNNGC	2 cut(s)	323, 332
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
NlaIII	CATG	2 cut(s)	118, 270
NlaIV	GGNNCC	3 cut(s)	292, 347, 348
NmeAIII	GCCGAG	1 cut(s)	402
NspI	RCATGY	2 cut(s)	118, 270
PaeI	GCATGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	40, 382
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PpuMI	RGGWCCY	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	292, 347, 348
PspPI	GGNCC	2 cut(s)	139, 346
PspPPI	RGGWCCY	1 cut(s)	346
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	6 cut(s)	46, 81, 85, 184, 462, 466
Sau96I	GGNCC	2 cut(s)	139, 346
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	156, 251
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	5 cut(s)	153, 205, 292, 305, 492
SinI	GGWCC	1 cut(s)	346
SphI	GCATGC	1 cut(s)	270
SsiI	CCGC	2 cut(s)	317, 335
SspMI	CTAG	3 cut(s)	236, 327, 499
StyD4I	CCNGG	2 cut(s)	154, 249
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	6 cut(s)	5, 84, 176, 306, 465, 492
TfiI	GAWTC	2 cut(s)	40, 382
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	323
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	72
XceI	RCATGY	2 cut(s)	118, 270
XspI	CTAG	3 cut(s)	236, 327, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.