Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

7118525 .. 7123407

Gene Structure 4883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGGAGAGGAAAGACATTTACCACTATTTGAGACAACGAAGGCAAAGGGAAAAGTCCTCTATAGGTTTTCTGCAGTGTCTGAATCTGTTGGTATATGTTTGATTTGGGTTTATAGAGTGATTCATATACCAAAAGCTGGAGAAGATGGAAGATTTGGTTGGATGCTATTGTTCGCCGCTGAGTTATGGTTCGCTTTTTACTGGTTCGTCACTCAAGCCCTTCGGTGGAGCCGCATCAACCGGCATACCTTCAAGGACAGGCTCTCTGAAAGATATGAGAATGAGTTGCCGGGGTGGACATATTCGTGTGCACAGCAGATCCTATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

109

Amino Acids

12.95

Weight (kDa)

9.03

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	2 cut(s)	177, 232
AclWI	GGATC	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	137, 225
AgsI	TTSAA	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	26
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	313
AlwNI	CAGNNNCTG	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	309
AsuC2I	CCSGG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	61, 72
BisI	GCNGC	2 cut(s)	177, 232
BlsI	GCNGC	2 cut(s)	178, 233
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	153, 243
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 225
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	137, 225
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	241, 290
BslI	CCNNNNNNNGG	2 cut(s)	137, 225
BsmAI	GTCTC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	2 cut(s)	177, 232
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	321
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	61, 72
BstSLI	GKGCMC	1 cut(s)	313
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	240
CviJI	RGCY	4 cut(s)	137, 218, 231, 262
CviKI_1	RGCY	4 cut(s)	137, 218, 231, 262
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	177, 232
FokI	GGATG	1 cut(s)	175
Fsp4HI	GCNGC	2 cut(s)	177, 232
GluI	GCNGC	2 cut(s)	177, 232
GsuI	CTGGAG	1 cut(s)	159
HapII	CCGG	2 cut(s)	241, 290
HinfI	GANTC	2 cut(s)	83, 121
HpaII	CCGG	2 cut(s)	241, 290
Hpy166II	GTNNAC	2 cut(s)	297, 311
Hpy188I	TCNGA	2 cut(s)	82, 268
Hpy8I	GTNNAC	2 cut(s)	297, 311
HpyAV	CCTTC	3 cut(s)	34, 230, 259
HpyCH4V	TGCA	2 cut(s)	74, 311
HpyF3I	CTNAG	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	5 cut(s)	123, 187, 244, 254, 303
LweI	GCATC	2 cut(s)	153, 243
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	2 cut(s)	155, 162
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	241, 290
MspR9I	CCNGG	1 cut(s)	291
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	83, 121
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	178, 233
PspN4I	GGNNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	304
SatI	GCNGC	2 cut(s)	177, 232
Sau3AI	GATC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	3 cut(s)	68, 139, 251
SfaNI	GCATC	2 cut(s)	153, 243
SfcI	CTRYAG	2 cut(s)	61, 72
SgeI	CNNG	9 cut(s)	150, 214, 227, 253, 265, 271, 302, 303, 318
SmiMI	CAYNNNNRTG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
SsiI	CCGC	2 cut(s)	177, 232
StyD4I	CCNGG	1 cut(s)	289
TauI	GCSGC	2 cut(s)	179, 234
TfiI	GAWTC	2 cut(s)	83, 121
TscAI	CASTG	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	137
VneI	GTGCAC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.