Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Reverse (-)

35772395 .. 35772709

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTGCTTGCAGATTTATACTGGCAAATTCGGGAGCTCGTCTCCAATGTTCGTTGTGCTAGCGACCGTTGCATTGCTCAATTTATACTGCTTTGCCTGGTTTGTGAAGGAAGCAATCACTGGAACAAAGGGCATTGCAGAAGTTTATGAGGCAATGTTCTTGCAGATTCTTCTATGTGTGGTTTTGATTGTCATTAACCAACCGTTATACGAAGCGCTATACCTAAGGAAGGACAAGGGGAAGCTGCCGAGCTCTGTAGCAATTAGGTCCATGGCATTTGCTGGATTTGCTTGTTTATGTTTCAAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

8.88

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	26, 305
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	3 cut(s)	36, 244, 252
AluI	AGCT	3 cut(s)	36, 244, 252
Alw21I	GWGCWC	2 cut(s)	38, 254
Alw26I	GTCTC	1 cut(s)	45
Aor51HI	AGCGCT	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	2 cut(s)	26, 305
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	267
AsuNHI	GCTAGC	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	267
AxyI	CCTNAGG	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	38, 254
Bbv12I	GWGCWC	2 cut(s)	38, 254
BbvI	GCAGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	97
BmtI	GCTAGC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	25, 124
Bse21I	CCTNAGG	1 cut(s)	224
Bse3DI	GCAATG	3 cut(s)	71, 132, 159
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	3 cut(s)	71, 132, 159
BseNI	ACTGG	2 cut(s)	25, 124
BseXI	GCAGC	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	66
BsiHKAI	GWGCWC	2 cut(s)	38, 254
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	38, 254
Bsp19I	CCATGG	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	62
BsrDI	GCAATG	3 cut(s)	71, 132, 159
BsrI	ACTGG	2 cut(s)	25, 124
BssECI	CCNNGG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	67, 204
BstC8I	GCNNGC	2 cut(s)	8, 60
BstDEI	CTNAG	1 cut(s)	224
BstDSI	CCRYGG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	45
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 287
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	8, 60
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	267
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	3 cut(s)	36, 244, 252
CviKI_1	RGCY	3 cut(s)	36, 244, 252
DdeI	CTNAG	1 cut(s)	224
Ecl136II	GAGCTC	2 cut(s)	36, 252
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	38, 254
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	216
Eco53kI	GAGCTC	2 cut(s)	36, 252
Eco81I	CCTNAGG	1 cut(s)	224
EcoICRI	GAGCTC	2 cut(s)	36, 252
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	38, 254
ErhI	CCWWGG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	1 cut(s)	274
FaiI	YATR	9 cut(s)	18, 85, 147, 175, 208, 220, 272, 298, 311
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	38, 254
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	245
HaeII	RGCGCY	1 cut(s)	218
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	100, 223
HpyCH4III	ACNGT	2 cut(s)	67, 204
HpyCH4V	TGCA	4 cut(s)	10, 71, 137, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 287
HpyF3I	CTNAG	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	6, 82, 105, 109, 267
Lsp1109I	GCAGC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	59
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	2 cut(s)	38, 254
MluCI	AATT	4 cut(s)	26, 79, 261, 305
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	68, 287
NcoI	CCATGG	1 cut(s)	270
NheI	GCTAGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	246
Psp124BI	GAGCTC	2 cut(s)	38, 254
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	267
SacI	GAGCTC	2 cut(s)	38, 254
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	245
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	38, 254
SetI	ASST	5 cut(s)	38, 225, 246, 254, 269
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	267
Sse9I	AATT	4 cut(s)	26, 79, 261, 305
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	2 cut(s)	38, 254
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	67, 204
TasI	AATT	4 cut(s)	26, 79, 261, 305
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	244
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	26, 305
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.