Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014402.1

Orthogroup ID

OG0000273

Physical Location & Seq

Genomic Coordinates Forward (+)

760 .. 1074

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014402.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgggggagcgagggatcagttcaccattgttcgagacgaagagggccaaggggatagttctgtataagctttttgctgcgtctattttcgtgggtatatgttttatctgggtttacaggttgagtcatataccaaaagctggagaagatggaaggtttggttggatgggtctgctgggtgctgagttatggttcgggttttactggctcttcactcaagcctgccgctggaaccgcgtgtatcggcacaccttcagggacaggctctctcggagaggtacttatacctatgaattagaatcattaaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

104

Amino Acids

12.33

Weight (kDa)

10.01

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55850
fragaria_vesca	FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42743 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42750 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42760 FvH4_3g42770 FvH4_3g42800 FvH4_3g42810 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42890 FvH4_3g42900
malus_domestica	MD03G1028800.v1.1 MD03G1028900.v1.1 MD03G1029000.v1.1 MD03G1029100.v1.1
prunus_persica	Prupe.6G024800_v2.0.a1 Prupe.6G024900_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025000_v2.0.a1 Prupe.6G025100_v2.0.a1 Prupe.6G025100_v2.0.a1
pyrus_communis	pycom01g03430 pycom03g02330 pycom03g02340 pycom03g02360 pycom03g02380 pycom03g02400 pycom03g02410 pycom05g13920
rosa_chinensis	RchiOBHm_Chr5g0076821 RchiOBHm_Chr5g0076831 RchiOBHm_Chr5g0076851 RchiOBHm_Chr5g0076871 RchiOBHm_Chr5g0076891 RchiOBHm_Chr5g0076901 RchiOBHm_Chr5g0076911 RchiOBHm_Chr5g0076921
rosa_laevigata	RLG00000036625 RLG00000036626 RLG00000036627 RLG00000036630 RLG00000036632 RLG00000036634 RLG00000036635
rosa_multiflora	Rmu_co8084432.1_g000001 Rmu_co8208886.1_g000001 Rmu_co8325177.1_g000001 Rmu_sc0003799.1_g000001 Rmu_sc0003799.1_g000002 Rmu_sc0003799.1_g000006 Rmu_sc0003799.1_g000009 Rmu_sc0004655.1_g000002 Rmu_sc0004655.1_g000014 Rmu_sc0004655.1_g000015 Rmu_sc0007021.1_g000003 Rmu_sc0007021.1_g000013 Rmu_sc0007021.1_g000014 Rmu_sc0008244.1_g000002 Rmu_sc0013263.1_g000004 Rmu_sc0014402.1_g000001 Rmu_ssc0000184.1_g000003 Rmu_ssc0000184.1_g000004 Rmu_ssc0000184.1_g000005 Rmu_ssc0000184.1_g000006 Rmu_ssc0000184.1_g000014 Rmu_ssc0000184.1_g000021
rosa_roxburghii	Rroxscaffold_1G00005210 Rroxscaffold_1G00005220 Rroxscaffold_1G00005250 Rroxscaffold_1G00005280 Rroxscaffold_1G00005300 Rroxscaffold_1G00005310
rosa_rugosa	Rorug05G0449200 Rorug05G0449300 Rorug05G0449300 Rorug05G0449300 Rorug05G0449500 Rorug05G0449600
rosa_samantha	Rh5AG503600 Rh5AG503700 Rh5AG503900 Rh5AG504000 Rh5AG504100 Rh5BG525000 Rh5BG525200 Rh5BG525300 Rh5BG525500 Rh5BG525700 Rh5BG525900 Rh5BG526000 Rh5CG548600 Rh5CG548800 Rh5CG548900 Rh5CG549100 Rh5CG549300 Rh5CG549500 Rh5DG537300 Rh5DG537400 Rh5DG537500 Rh5DG537700 Rh5DG537900 Rh5DG538000 Rh5DG544100
rosa_wichuraiana	Rw0G009920 Rw5G046720 Rw5G046730 Rw5G047200 Rw5G047210 Rw5G047240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	226, 235
AclWI	GGATC	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	2 cut(s)	140, 228
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	2 cut(s)	70, 140
AluI	AGCT	2 cut(s)	70, 140
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	15
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	143, 160
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	78, 226
BlsI	GCNGC	2 cut(s)	79, 227
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 228
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	140, 228
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	140, 228
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	226, 235
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	35, 215
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	279
CviJI	RGCY	6 cut(s)	47, 70, 140, 208, 221, 265
CviKI_1	RGCY	6 cut(s)	47, 70, 140, 208, 221, 265
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	2 cut(s)	35, 215
EarI	CTCTTC	2 cut(s)	35, 215
Eco130I	CCWWGG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	29
FaiI	YATR	8 cut(s)	66, 98, 100, 129, 131, 190, 285, 291
FaqI	GGGAC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	78, 226
FokI	GGATG	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	78, 226
GluI	GCNGC	2 cut(s)	78, 226
GsaI	CCCAGC	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	47
HgaI	GACGC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	124, 299
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	23, 115
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	23, 115
HpyAV	CCTTC	2 cut(s)	147, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	15
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	7
LpnPI	CCDG	9 cut(s)	94, 103, 126, 161, 190, 214, 235, 241, 247
Lsp1109I	GCAGC	1 cut(s)	64
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	52, 158, 202
MluCI	AATT	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	3 cut(s)	5, 36, 269
MseI	TTAA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	79, 227
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	2 cut(s)	78, 226
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	1 cut(s)	45
SchI	GAGTC	1 cut(s)	133
SetI	ASST	7 cut(s)	72, 122, 142, 158, 254, 280, 290
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	226, 235
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	293
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	306
Van91I	CCANNNNNTGG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.