FvH4_4g17840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001007
Physical Location & Seq
Reverse (-)
21823838 .. 21824644
807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17840.t1

Sequence Viewer

Length: 345 bp
ATGATAATTAAAGGCAGGGCTAAGTACTGGAGAAGTCACAAGAACAGACTTAAGACACTCTATTATGATACCAAACTAGGCACACCGGGACTTTGTGTATGTGAGGATAAAGATGTAGACGCTGGTGCATGGCGTGAAATGGTGAAATATTGGGATAAAGAAAGGATCACAGAAATTGCTGAGAAGAATTCTACTAATCGAAAAGAACAGAAATACAACCACACCTCTGGCACAAAGAGTTATGCACGTAGTCGAGCAAGATATCTCAAGAAGCATGGTCATGAGCCTGATCCTATTAAGTTTTTTTATGATAAACATACACGGAAGGATGATCGAAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

115

Amino Acids

13.7

Weight (kDa)

9.81

Isoelectric Point (pI)

20.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 43 - 112 1.2e-15 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AclWI GGATC 2 cut(s) 173, 284
AcsI RAATTY 1 cut(s) 187
AfaI GTAC 1 cut(s) 26
AflII CTTAAG 1 cut(s) 50
AlwI GGATC 2 cut(s) 173, 284
ApoI RAATTY 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 154
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 77
BfrI CTTAAG 1 cut(s) 50
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 32
BseGI GGATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 165, 289, 331
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 2 cut(s) 280, 341
BspPI GGATC 2 cut(s) 173, 284
BspTI CTTAAG 1 cut(s) 50
BsrI ACTGG 1 cut(s) 32
BssMI GATC 3 cut(s) 165, 289, 331
BstAFI CTTAAG 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 21, 180
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 3 cut(s) 168, 292, 334
BstMBI GATC 3 cut(s) 165, 289, 331
BstSCI CCNGG 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 334
CciI TCATGA 2 cut(s) 280, 341
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 25
CviAII CATG 4 cut(s) 129, 275, 281, 342
CviJI RGCY 2 cut(s) 20, 286
CviKI_1 RGCY 2 cut(s) 20, 286
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 21, 180
DpnI GATC 3 cut(s) 167, 291, 333
DpnII GATC 3 cut(s) 165, 289, 331
Eco32I GATATC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 187
EcoRV GATATC 1 cut(s) 263
FaeI CATG 4 cut(s) 132, 278, 284, 345
FaiI YATR 9 cut(s) 66, 100, 130, 243, 276, 282, 309, 318, 343
FaqI GGGAC 1 cut(s) 102
FatI CATG 4 cut(s) 128, 274, 280, 341
FblI GTMKAC 1 cut(s) 117
FokI GGATG 1 cut(s) 341
FspBI CTAG 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 49
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 128
Hin1II CATG 4 cut(s) 132, 278, 284, 345
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 268, 281, 342
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 128, 245
HpyF3I CTNAG 2 cut(s) 21, 180
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 4 cut(s) 132, 278, 284, 345
Kzo9I GATC 3 cut(s) 165, 289, 331
LpnPI CCDG 5 cut(s) 13, 99, 108, 213, 300
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 35
MalI GATC 3 cut(s) 167, 291, 333
MboI GATC 3 cut(s) 165, 289, 331
MboII GAAGA 1 cut(s) 196
MluCI AATT 3 cut(s) 6, 174, 187
MnlI CCTC 2 cut(s) 97, 235
MseI TTAA 3 cut(s) 9, 51, 297
MslI CAYNNNNRTG 1 cut(s) 279
MspCI CTTAAG 1 cut(s) 50
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 87
NciI CCSGG 1 cut(s) 87
NdeII GATC 3 cut(s) 165, 289, 331
NlaIII CATG 4 cut(s) 132, 278, 284, 345
NmuCI GTSAC 1 cut(s) 35
PagI TCATGA 2 cut(s) 280, 341
Ppu21I YACGTR 1 cut(s) 248
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 3 cut(s) 9, 51, 297
Sau3AI GATC 3 cut(s) 165, 289, 331
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 87
SetI ASST 2 cut(s) 227, 250
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 50, 266
SmoI CTYRAG 2 cut(s) 50, 266
Sse9I AATT 3 cut(s) 6, 174, 187
SspI AATATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 85
TaiI ACGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 199, 253, 334
TasI AATT 3 cut(s) 6, 174, 187
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 3 cut(s) 9, 51, 297
Tru9I TTAA 3 cut(s) 9, 51, 297
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 337
Vha464I CTTAAG 1 cut(s) 50
XapI RAATTY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.