Rh6AG142600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
22150617 .. 22151333
717 bp
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UTR
Exon/CDS
Intron
Rh6AG142600.1

Sequence Viewer

Length: 393 bp
ATGCAAGAGAAGTTGGCAGAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGAACCTAAGAAACGTCACAGAGTTTGCTGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAAATCACATGGAAGACATTATGGTTACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAAGCACAGGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAGCAATCTTCTCAGCCTTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

15.0

Weight (kDa)

6.07

Isoelectric Point (pI)

75.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 35, 155, 281
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 271
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 283
BccI CCATC 2 cut(s) 76, 155
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 272
BlsI GCNGC 1 cut(s) 273
BmiI GGNNCC 2 cut(s) 87, 144
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 299, 392
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 298, 391
BspLI GGNNCC 2 cut(s) 87, 144
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 3 cut(s) 90, 285, 378
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 261
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 188
CviJI RGCY 2 cut(s) 168, 382
CviKI_1 RGCY 2 cut(s) 168, 382
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 90, 285, 378
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 70, 72, 117, 140, 189, 201, 224
FatI CATG 1 cut(s) 187
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 272
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 272
GsaI CCCAGC 1 cut(s) 349
Hin1II CATG 1 cut(s) 191
HinfI GANTC 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 29, 372
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 7 cut(s) 4, 29, 77, 211, 271, 301, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 3 cut(s) 90, 285, 378
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 1 cut(s) 191
LpnPI CCDG 4 cut(s) 147, 251, 272, 359
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 45
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 98, 203, 213
MboII GAAGA 3 cut(s) 143, 204, 366
MluCI AATT 4 cut(s) 21, 156, 218, 314
MlyI GAGTC 1 cut(s) 242
MseI TTAA 1 cut(s) 326
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeI CATATG 1 cut(s) 70
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 2 cut(s) 87, 144
NmuCI GTSAC 2 cut(s) 98, 213
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 87, 144
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 272
SchI GAGTC 1 cut(s) 242
SetI ASST 8 cut(s) 40, 91, 100, 127, 136, 170, 270, 364
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 4 cut(s) 21, 156, 218, 314
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 100
TasI AATT 4 cut(s) 21, 156, 218, 314
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 98, 213
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 2 cut(s) 98, 213
TspRI CASTG 1 cut(s) 84
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.