Rroxscaffold_7G00164120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001007
Physical Location & Seq
Reverse (-)
6186105 .. 6186467
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164120.1

Sequence Viewer

Length: 363 bp
ATGGAGTTAGATTCCAAGTACCAACAACAACAAGAGCAAGCACAGGTGCAGCAAATTCAAACTCGGGAACAACTCTTGCAAACCCAACGAGAATTGGCAAAGTTAAAGAAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCGGGGCTTCCATATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTATCCAAGAAAATGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCCGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.88

Weight (kDa)

6.72

Isoelectric Point (pI)

84.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AclWI GGATC 2 cut(s) 345, 358
AcsI RAATTY 1 cut(s) 54
AfaI GTAC 2 cut(s) 20, 194
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 59, 313
AluBI AGCT 3 cut(s) 319, 326, 342
AluI AGCT 3 cut(s) 319, 326, 342
AlwI GGATC 2 cut(s) 345, 358
Ama87I CYCGRG 2 cut(s) 63, 156
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 54
AvaI CYCGRG 2 cut(s) 63, 156
BamHI GGATCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 61
BciVI GTATCC 1 cut(s) 302
BfuI GTATCC 1 cut(s) 302
BglII AGATCT 1 cut(s) 210
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmeT110I CYCGRG 2 cut(s) 63, 156
BmiI GGNNCC 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 200, 262, 271
BseLI CCNNNNNNNGG 1 cut(s) 257
BseNI ACTGG 3 cut(s) 200, 262, 271
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 63, 156
BslI CCNNNNNNNGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 199
BsoBI CYCGRG 2 cut(s) 63, 156
Bsp143I GATC 2 cut(s) 210, 350
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 2 cut(s) 345, 358
BsrI ACTGG 3 cut(s) 200, 262, 271
BssMI GATC 2 cut(s) 210, 350
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 320
BstKTI GATC 2 cut(s) 213, 353
BstMBI GATC 2 cut(s) 210, 350
BstMWI GCNNNNNNNGC 2 cut(s) 205, 232
BstNSI RCATGY 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 2 cut(s) 210, 350
BstYI RGATCY 2 cut(s) 210, 350
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 19, 193
CviAII CATG 1 cut(s) 242
CviJI RGCY 6 cut(s) 162, 199, 235, 319, 326, 342
CviKI_1 RGCY 6 cut(s) 162, 199, 235, 319, 326, 342
CviQI GTAC 2 cut(s) 19, 193
DdeI CTNAG 1 cut(s) 320
DpnI GATC 2 cut(s) 212, 352
DpnII GATC 2 cut(s) 210, 350
Eco88I CYCGRG 2 cut(s) 63, 156
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 168, 170, 243, 278
FatI CATG 1 cut(s) 241
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 199
Hin1II CATG 1 cut(s) 245
HinfI GANTC 2 cut(s) 11, 334
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 150, 183
HpyCH4V TGCA 2 cut(s) 49, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 205, 232
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 210, 350
LpnPI CCDG 6 cut(s) 29, 137, 181, 243, 252, 329
Lsp1109I GCAGC 1 cut(s) 61
MalI GATC 2 cut(s) 212, 352
MboI GATC 2 cut(s) 210, 350
MboII GAAGA 1 cut(s) 144
MflI RGATCY 2 cut(s) 210, 350
MluCI AATT 2 cut(s) 54, 92
MnlI CCTC 5 cut(s) 192, 195, 210, 228, 246
MseI TTAA 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 205, 232
NdeI CATATG 1 cut(s) 168
NdeII GATC 2 cut(s) 210, 350
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 352
NspI RCATGY 1 cut(s) 245
PfeI GAWTC 2 cut(s) 11, 334
PkrI GCNGC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 352
PsuI RGATCY 2 cut(s) 210, 350
RsaI GTAC 2 cut(s) 20, 194
RsaNI GTAC 2 cut(s) 19, 193
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 210, 350
SetI ASST 5 cut(s) 48, 142, 321, 328, 344
Sse9I AATT 2 cut(s) 54, 92
SsiI CCGC 1 cut(s) 206
TaqI TCGA 1 cut(s) 332
TasI AATT 2 cut(s) 54, 92
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 2 cut(s) 11, 334
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 318
TspRI CASTG 1 cut(s) 262
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.