Rmu_sc0000258.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000258.1
OG0001007
Physical Location & Seq
Forward (+)
101968 .. 104798
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000258.1_g000019.1.cds

Sequence Viewer

Length: 1125 bp
atggatcaatatggtttcacattggtcaatttcaatgaagtgttgcatacgaatgacacatttttattagcctcatcagcaatacaagctttttatgttaaggatccagtagacccaaattggcatgttgcagttgttacacaaccaagagacttttatgatgtagttgctgaagatgatgtctctgttaatcttgaaaacccattacatgcagtagatcattatgcaataccagatcttgatgaccaatttatggatagcgaggaatttgatactagattggatgttgatgggactcatatacaagccttttatgttaaagatccagtagacccaaattggcatgttgcagttgttacaaaaccaaaagatttttatgatgtagttgctgaagatgatgtctctgttaatcttgaaaacccattacatgcagtagatcattatgcaataccagatcttgatgaccaatttatggatagcgaggaatttgatactagattggatgttgatgggactcatatgagttctgaagatagttcatgggaaggtgatatagaaggaccaaatgattttgctaatggcacatgcaaaactaccaaagtacgtggtaaaggaacatgtacttggatggaagataataaaaaagaatccctcgagttcaattctatgggtgttagtgtaggttctaatgatggaaaatttggccggtacttgggtgggttagctcgagattctaatgtacttccgctcgtcactaaaccttggcctaaagtctcaagtactattaaagatcccttatgggaccaaatatatgtaattgctgagaagaattctgcaaatcgaaaagaacaaaaatacaatcacacctctggcaccaagagttatgcacgcagtcaagcagaatatgctggtatgcaagagaagttggcagaaattgtagcagttgaaggtaatgagactacaaagatgcgagaaagagcatatgttgcagtgatgggacctgagaaacgtcacatagttcgccgttatggactaggtgtaatacctgatatggtgccttatcttcaaattgatggtagctcatcatcacacagatcacatggaagacattatgctcaattgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

374

Amino Acids

42.17

Weight (kDa)

4.71

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 872, 1054
AccB7I CCANNNNNTGG 2 cut(s) 253, 472
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 2 cut(s) 111, 330
AciI CCGC 1 cut(s) 746
AclWI GGATC 5 cut(s) 12, 98, 111, 317, 785
AcoI YGGCCR 1 cut(s) 703
AcsI RAATTY 4 cut(s) 266, 485, 698, 829
AcuI CTGAAG 3 cut(s) 192, 411, 549
AfaI GTAC 5 cut(s) 603, 622, 710, 741, 781
AfiI CCNNNNNNNGG 3 cut(s) 253, 472, 712
AflIII ACRYGT 1 cut(s) 617
AgsI TTSAA 6 cut(s) 34, 197, 416, 661, 947, 1067
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AluBI AGCT 3 cut(s) 89, 725, 1080
AluI AGCT 3 cut(s) 89, 725, 1080
Alw26I GTCTC 5 cut(s) 144, 187, 406, 778, 950
AlwI GGATC 5 cut(s) 12, 98, 111, 317, 785
Ama87I CYCGRG 2 cut(s) 653, 726
AoxI GGCC 2 cut(s) 703, 764
ApoI RAATTY 4 cut(s) 266, 485, 698, 829
AspS9I GGNCC 3 cut(s) 560, 802, 998
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 2 cut(s) 653, 726
AvaII GGWCC 3 cut(s) 560, 802, 998
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BamHI GGATCC 1 cut(s) 103
BanI GGYRCC 2 cut(s) 872, 1054
BbsI GAAGAC 1 cut(s) 1111
BccI CCATC 6 cut(s) 284, 503, 622, 686, 988, 1067
BceAI ACGGC 1 cut(s) 1008
BcoDI GTCTC 5 cut(s) 144, 187, 406, 778, 950
BfaI CTAG 3 cut(s) 276, 495, 1034
BglII AGATCT 2 cut(s) 235, 454
BmcAI AGTACT 1 cut(s) 781
Bme18I GGWCC 3 cut(s) 560, 802, 998
BmeT110I CYCGRG 2 cut(s) 653, 726
BmgT120I GGNCC 3 cut(s) 560, 802, 998
BmiI GGNNCC 5 cut(s) 105, 803, 874, 999, 1056
BmsI GCATC 1 cut(s) 957
BpiI GAAGAC 1 cut(s) 1111
BpuEI CTTGAG 1 cut(s) 760
BsaAI YACGTR 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 761
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 472, 712
Bse118I RCCGGY 1 cut(s) 705
Bse1I ACTGG 2 cut(s) 107, 326
BseDI CCNNGG 1 cut(s) 761
BseGI GGATG 3 cut(s) 289, 508, 633
BseLI CCNNNNNNNGG 3 cut(s) 253, 472, 712
BseMII CTCAG 2 cut(s) 813, 993
BseNI ACTGG 2 cut(s) 107, 326
BshFI GGCC 2 cut(s) 705, 766
BshNI GGYRCC 2 cut(s) 872, 1054
BsiHKCI CYCGRG 2 cut(s) 653, 726
BsiSI CCGG 1 cut(s) 706
BslFI GGGAC 4 cut(s) 307, 526, 815, 1011
BslI CCNNNNNNNGG 3 cut(s) 253, 472, 712
BsmAI GTCTC 5 cut(s) 144, 187, 406, 778, 950
BsmFI GGGAC 4 cut(s) 307, 526, 815, 1011
BsnI GGCC 2 cut(s) 705, 766
BsoBI CYCGRG 2 cut(s) 653, 726
Bsp143I GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
BspACI CCGC 1 cut(s) 746
BspANI GGCC 2 cut(s) 705, 766
BspCNI CTCAG 2 cut(s) 814, 994
BspLI GGNNCC 5 cut(s) 105, 803, 874, 999, 1056
BspPI GGATC 5 cut(s) 12, 98, 111, 317, 785
BspT107I GGYRCC 2 cut(s) 872, 1054
BsrBI CCGCTC 1 cut(s) 748
BsrFI RCCGGY 1 cut(s) 705
BsrI ACTGG 2 cut(s) 107, 326
BssAI RCCGGY 1 cut(s) 705
BssECI CCNNGG 1 cut(s) 761
BssMI GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
BssT1I CCWWGG 1 cut(s) 761
BstAPI GCANNNNNTGC 2 cut(s) 905, 986
BstBAI YACGTR 1 cut(s) 605
BstC8I GCNNGC 1 cut(s) 889
BstDEI CTNAG 2 cut(s) 822, 1002
BstF5I GGATG 3 cut(s) 289, 508, 633
BstKTI GATC 9 cut(s) 7, 106, 220, 238, 325, 439, 457, 793, 1097
BstMAI GTCTC 5 cut(s) 144, 187, 406, 778, 950
BstMBI GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
BstMWI GCNNNNNNNGC 4 cut(s) 77, 86, 905, 986
BstNSI RCATGY 6 cut(s) 128, 212, 347, 431, 588, 621
BstV2I GAAGAC 1 cut(s) 1111
BstX2I RGATCY 5 cut(s) 103, 235, 322, 454, 790
BstYI RGATCY 5 cut(s) 103, 235, 322, 454, 790
BsuRI GGCC 2 cut(s) 705, 766
BtsCI GGATG 3 cut(s) 289, 508, 633
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 1 cut(s) 996
Cac8I GCNNGC 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 705
Cfr13I GGNCC 3 cut(s) 560, 802, 998
Csp6I GTAC 5 cut(s) 602, 621, 709, 740, 780
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviAII CATG 8 cut(s) 125, 209, 344, 428, 540, 585, 618, 1100
CviJI RGCY 7 cut(s) 71, 89, 308, 705, 725, 766, 1080
CviKI_1 RGCY 7 cut(s) 71, 89, 308, 705, 725, 766, 1080
CviQI GTAC 5 cut(s) 602, 621, 709, 740, 780
DdeI CTNAG 2 cut(s) 822, 1002
DpnI GATC 9 cut(s) 6, 105, 219, 237, 324, 438, 456, 792, 1096
DpnII GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
EaeI YGGCCR 1 cut(s) 703
Eco130I CCWWGG 1 cut(s) 761
Eco47I GGWCC 3 cut(s) 560, 802, 998
Eco57I CTGAAG 3 cut(s) 192, 411, 549
Eco88I CYCGRG 2 cut(s) 653, 726
EcoO109I RGGNCCY 1 cut(s) 998
EcoRI GAATTC 1 cut(s) 829
EcoT14I CCWWGG 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 8 cut(s) 128, 212, 347, 431, 543, 588, 621, 1103
FaqI GGGAC 4 cut(s) 307, 526, 815, 1011
FatI CATG 8 cut(s) 124, 208, 343, 427, 539, 584, 617, 1099
FauNDI CATATG 2 cut(s) 519, 982
FblI GTMKAC 2 cut(s) 111, 330
FokI GGATG 3 cut(s) 296, 515, 640
FspBI CTAG 3 cut(s) 276, 495, 1034
HaeIII GGCC 2 cut(s) 705, 766
HapII CCGG 1 cut(s) 706
Hin1II CATG 8 cut(s) 128, 212, 347, 431, 543, 588, 621, 1103
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 4 cut(s) 295, 514, 647, 731
HpaII CCGG 1 cut(s) 706
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 2 cut(s) 112, 331
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 5 cut(s) 194, 239, 413, 458, 728
Hpy8I GTNNAC 2 cut(s) 112, 331
HpyAV CCTTC 3 cut(s) 539, 551, 941
HpyCH4IV ACGT 2 cut(s) 604, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 86, 905, 986
HpyF3I CTNAG 2 cut(s) 822, 1002
HpySE526I ACGT 2 cut(s) 604, 1009
Hsp92II CATG 8 cut(s) 128, 212, 347, 431, 543, 588, 621, 1103
Kzo9I GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
LpnPI CCDG 9 cut(s) 120, 246, 339, 465, 719, 855, 894, 1014, 1059
LweI GCATC 1 cut(s) 957
MaeI CTAG 3 cut(s) 276, 495, 1034
MaeII ACGT 2 cut(s) 604, 1009
MaeIII GTNAC 4 cut(s) 136, 355, 751, 1010
MalI GATC 9 cut(s) 6, 105, 219, 237, 324, 438, 456, 792, 1096
MbiI CCGCTC 1 cut(s) 748
MboI GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
MboII GAAGA 7 cut(s) 185, 404, 542, 644, 838, 1055, 1116
MfeI CAATTG 1 cut(s) 1118
MflI RGATCY 5 cut(s) 103, 235, 322, 454, 790
MlyI GAGTC 2 cut(s) 289, 508
MnlI CCTC 5 cut(s) 82, 256, 475, 662, 877
MseI TTAA 5 cut(s) 99, 189, 318, 408, 786
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 706
MunI CAATTG 1 cut(s) 1118
MwoI GCNNNNNNNGC 4 cut(s) 77, 86, 905, 986
NdeI CATATG 2 cut(s) 519, 982
NdeII GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
NlaIII CATG 8 cut(s) 128, 212, 347, 431, 543, 588, 621, 1103
NlaIV GGNNCC 5 cut(s) 105, 803, 874, 999, 1056
NmuCI GTSAC 2 cut(s) 751, 1010
NspI RCATGY 6 cut(s) 128, 212, 347, 431, 588, 621
PaeR7I CTCGAG 2 cut(s) 653, 726
PciI ACATGT 1 cut(s) 617
PfeI GAWTC 2 cut(s) 647, 731
PflMI CCANNNNNTGG 2 cut(s) 253, 472
PleI GAGTC 2 cut(s) 289, 508
PpsI GAGTC 2 cut(s) 289, 508
Ppu21I YACGTR 1 cut(s) 605
PpuMI RGGWCCY 1 cut(s) 998
PscI ACATGT 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 998
PspN4I GGNNCC 5 cut(s) 105, 803, 874, 999, 1056
PspPI GGNCC 3 cut(s) 560, 802, 998
PspPPI RGGWCCY 1 cut(s) 998
PspXI VCTCGAGB 1 cut(s) 653
PsuI RGATCY 5 cut(s) 103, 235, 322, 454, 790
RsaI GTAC 5 cut(s) 603, 622, 710, 741, 781
RsaNI GTAC 5 cut(s) 602, 621, 709, 740, 780
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 5 cut(s) 99, 189, 318, 408, 786
Sau3AI GATC 9 cut(s) 4, 103, 217, 235, 322, 436, 454, 790, 1094
Sau96I GGNCC 3 cut(s) 560, 802, 998
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 2 cut(s) 289, 508
SfaNI GCATC 1 cut(s) 957
Sfr274I CTCGAG 2 cut(s) 653, 726
SinI GGWCC 3 cut(s) 560, 802, 998
SlaI CTCGAG 2 cut(s) 653, 726
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 653, 726, 775
SmoI CTYRAG 3 cut(s) 653, 726, 775
SsiI CCGC 1 cut(s) 746
SspMI CTAG 3 cut(s) 276, 495, 1034
StyI CCWWGG 1 cut(s) 761
TaiI ACGT 2 cut(s) 607, 1012
TaqI TCGA 3 cut(s) 654, 727, 841
TatI WGTACW 3 cut(s) 620, 739, 779
TfiI GAWTC 2 cut(s) 647, 731
Tru1I TTAA 5 cut(s) 99, 189, 318, 408, 786
Tru9I TTAA 5 cut(s) 99, 189, 318, 408, 786
TscAI CASTG 1 cut(s) 996
TseFI GTSAC 2 cut(s) 751, 1010
Tsp45I GTSAC 2 cut(s) 751, 1010
TspDTI ATGAA 2 cut(s) 51, 528
TspRI CASTG 1 cut(s) 996
Van91I CCANNNNNTGG 2 cut(s) 253, 472
VpaK11BI GGWCC 3 cut(s) 560, 802, 998
XapI RAATTY 4 cut(s) 266, 485, 698, 829
XceI RCATGY 6 cut(s) 128, 212, 347, 431, 588, 621
XhoI CTCGAG 2 cut(s) 653, 726
XmiI GTMKAC 2 cut(s) 111, 330
XspI CTAG 3 cut(s) 276, 495, 1034
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.