Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Reverse (-)

49970797 .. 49975262

Gene Structure 4466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCTTCAAAGGTTGTCAACAAGTTTCTCCGTCCGAATATTATGGATAAAGAATGGGATAGTTTTGGAAGACTGCATGAAAGAGGGAAGGAAGTCCCCAAGGCAACAAAACTTCTGACGAAACTTTTTCCTAATAAAGTAACCATTCATATGCCACAGGATGAGGGACTTCTTGTCCCATGGAAACAGCAATTGGATCGTGATGCCGAAACCCTCAAAATGAAGGGAAATTTGAACCACTTGCGCACTGTTCTGGGTCAGTGTGGGATGGAATGTGAAGGACTTGATACGCTAAGCATCAAGGACCAAACACTTACAAATGAAATGAGTGCCCAAAGTATTGGAGAACAAGAGGATCTGAGTCACTCACACAAGCTTCGCATCTATGGAGACTGTTATTCACAAAGAAACCAACTAGCTGGTCCCCCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

144

Amino Acids

16.41

Weight (kDa)

7.75

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	245
AclWI	GGATC	2 cut(s)	204, 363
AcsI	RAATTY	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	9, 235
AhdI	GACNNNNNGTC	1 cut(s)	173
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	376, 419
AluI	AGCT	2 cut(s)	376, 419
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	204, 363
ApoI	RAATTY	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	304, 422
AvaII	GGWCC	2 cut(s)	304, 422
BaeGI	GKGCMC	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	416
BlpI	GCTNAGC	1 cut(s)	293
Bme18I	GGWCC	2 cut(s)	304, 422
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	304, 422
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	3 cut(s)	193, 306, 390
BpiI	GAAGAC	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	293
BsaJI	CCNNGG	2 cut(s)	99, 179
BseDI	CCNNGG	2 cut(s)	99, 179
BseGI	GGATG	2 cut(s)	166, 273
BseMII	CTCAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	334
BslFI	GGGAC	4 cut(s)	80, 161, 180, 408
BsmAI	GTCTC	1 cut(s)	384
BsmFI	GGGAC	4 cut(s)	80, 161, 180, 408
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	196, 355
Bsp1720I	GCTNAGC	1 cut(s)	293
Bsp19I	CCATGG	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	204, 363
BssECI	CCNNGG	2 cut(s)	99, 179
BssMI	GATC	2 cut(s)	196, 355
BssT1I	CCWWGG	2 cut(s)	99, 179
Bst4CI	ACNGT	2 cut(s)	250, 395
BstDEI	CTNAG	3 cut(s)	293, 359, 432
BstDSI	CCRYGG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	166, 273
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	2 cut(s)	199, 358
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	2 cut(s)	196, 355
BstSLI	GKGCMC	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	2 cut(s)	341, 419
BstYI	RGATCY	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	166, 273
BtsIMutI	CAGTG	2 cut(s)	246, 266
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	304, 422
CviAII	CATG	2 cut(s)	77, 180
CviJI	RGCY	2 cut(s)	376, 419
CviKI_1	RGCY	2 cut(s)	376, 419
DdeI	CTNAG	3 cut(s)	293, 359, 432
DpnI	GATC	2 cut(s)	198, 357
DpnII	GATC	2 cut(s)	196, 355
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1105I	GACNNNNNGTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	99, 179
Eco47I	GGWCC	2 cut(s)	304, 422
EcoT14I	CCWWGG	2 cut(s)	99, 179
ErhI	CCWWGG	2 cut(s)	99, 179
FaeI	CATG	2 cut(s)	80, 183
FaiI	YATR	6 cut(s)	44, 78, 150, 152, 181, 387
FaqI	GGGAC	4 cut(s)	80, 161, 180, 408
FatI	CATG	2 cut(s)	76, 179
FauNDI	CATATG	1 cut(s)	150
FokI	GGATG	2 cut(s)	173, 280
FspBI	CTAG	1 cut(s)	416
FspI	TGCGCA	1 cut(s)	245
GlaI	GCGC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	80, 183
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	36, 117, 360
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	4 cut(s)	15, 82, 217, 272
HpyCH4III	ACNGT	2 cut(s)	250, 395
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	293, 359, 432
Hsp92II	CATG	2 cut(s)	80, 183
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	196, 355
LpnPI	CCDG	3 cut(s)	143, 239, 405
LweI	GCATC	3 cut(s)	193, 306, 390
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	139, 362
MalI	GATC	2 cut(s)	198, 357
MboI	GATC	2 cut(s)	196, 355
MboII	GAAGA	1 cut(s)	81
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	191, 229
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	4 cut(s)	77, 157, 224, 346
MslI	CAYNNNNRTG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	179
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	2 cut(s)	196, 355
NlaIII	CATG	2 cut(s)	80, 183
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	362
NsbI	TGCGCA	1 cut(s)	245
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	304, 422
PsuI	RGATCY	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	196, 355
Sau96I	GGNCC	2 cut(s)	304, 422
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	3 cut(s)	15, 378, 421
SfaNI	GCATC	3 cut(s)	193, 306, 390
SinI	GGWCC	2 cut(s)	304, 422
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	191, 229
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	416
StyI	CCWWGG	2 cut(s)	99, 179
TaaI	ACNGT	2 cut(s)	250, 395
TasI	AATT	2 cut(s)	191, 229
TscAI	CASTG	2 cut(s)	253, 266
TseFI	GTSAC	1 cut(s)	362
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	93, 137, 236, 336
TspGWI	ACGGA	1 cut(s)	20
TspRI	CASTG	2 cut(s)	253, 266
VpaK11BI	GGWCC	2 cut(s)	304, 422
XapI	RAATTY	1 cut(s)	229
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.