RLG00000007549

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001007
Physical Location & Seq
Reverse (-)
18041407 .. 18042630
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007549

Sequence Viewer

Length: 651 bp
ATGGTCAAATATTGGGATATTGAAAAGACAACAGCAGTTGCTAAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTTATGCAAGCAGTCGAGCAGAATATGCTGGTATGCAAGAGAAGTTGGCAAAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGTGTTCGCGGTTATGGACTAGGTGTAATACCTGATATGTTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAATCACAATTTATGGAGTTAGAGTCCAACTACCAACAACAAGAAGAGCAAGCACAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCCGTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTGCTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

217

Amino Acids

24.4

Weight (kDa)

7.06

Isoelectric Point (pI)

72.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 1 - 42 2e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccII CGCG 1 cut(s) 243
AciI CCGC 2 cut(s) 243, 494
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 545
AgsI TTSAA 4 cut(s) 23, 167, 287, 601
AluBI AGCT 4 cut(s) 300, 607, 614, 630
AluI AGCT 4 cut(s) 300, 607, 614, 630
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 646
AoxI GGCC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BanI GGYRCC 1 cut(s) 92
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 208, 287, 454
BceAI ACGGC 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 180
BglII AGATCT 1 cut(s) 498
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 94, 219
BmsI GCATC 2 cut(s) 177, 447
BpiI GAAGAC 1 cut(s) 331
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 545
Bse1I ACTGG 2 cut(s) 550, 559
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 545
BseMII CTCAG 3 cut(s) 213, 443, 633
BseNI ACTGG 2 cut(s) 550, 559
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 1 cut(s) 487
BshNI GGYRCC 1 cut(s) 92
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 545
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 1 cut(s) 487
Bsp143I GATC 3 cut(s) 314, 498, 638
BspACI CCGC 2 cut(s) 243, 494
BspANI GGCC 1 cut(s) 487
BspCNI CTCAG 3 cut(s) 214, 442, 634
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 94, 219
BspPI GGATC 1 cut(s) 646
BspQI GCTCTTC 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 550, 559
BssMI GATC 3 cut(s) 314, 498, 638
BssSI CACGAG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 2 cut(s) 125, 206
BstC8I GCNNGC 3 cut(s) 109, 393, 485
BstDEI CTNAG 5 cut(s) 42, 222, 429, 608, 642
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 243
BstKTI GATC 3 cut(s) 317, 501, 641
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 314, 498, 638
BstMWI GCNNNNNNNGC 6 cut(s) 125, 206, 397, 439, 493, 520
BstNSI RCATGY 1 cut(s) 533
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 331
BstX2I RGATCY 2 cut(s) 498, 638
BstYI RGATCY 2 cut(s) 498, 638
BsuRI GGCC 1 cut(s) 487
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 241, 543
Cac8I GCNNGC 3 cut(s) 109, 393, 485
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 2 cut(s) 320, 530
CviJI RGCY 7 cut(s) 300, 433, 487, 523, 607, 614, 630
CviKI_1 RGCY 7 cut(s) 300, 433, 487, 523, 607, 614, 630
DdeI CTNAG 5 cut(s) 42, 222, 429, 608, 642
DpnI GATC 3 cut(s) 316, 500, 640
DpnII GATC 3 cut(s) 314, 498, 638
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 49
FaeI CATG 2 cut(s) 323, 533
FaqI GGGAC 1 cut(s) 231
FatI CATG 2 cut(s) 319, 529
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 487
Hin1II CATG 2 cut(s) 323, 533
HinfI GANTC 2 cut(s) 365, 622
Hpy188I TCNGA 1 cut(s) 643
Hpy188III TCNNGA 1 cut(s) 454
HpyAV CCTTC 4 cut(s) 161, 423, 460, 471
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 7 cut(s) 56, 107, 136, 161, 209, 343, 439
HpyF10VI GCNNNNNNNGC 6 cut(s) 125, 206, 397, 439, 493, 520
HpyF3I CTNAG 5 cut(s) 42, 222, 429, 608, 642
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 2 cut(s) 323, 533
Kzo9I GATC 3 cut(s) 314, 498, 638
LguI GCTCTTC 1 cut(s) 381
LpnPI CCDG 9 cut(s) 75, 114, 234, 279, 467, 469, 531, 540, 617
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 177, 447
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 316, 500, 640
MboI GATC 3 cut(s) 314, 498, 638
MboII GAAGA 5 cut(s) 58, 275, 336, 398, 417
MflI RGATCY 2 cut(s) 498, 638
MluCI AATT 4 cut(s) 49, 153, 288, 350
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 6 cut(s) 97, 480, 483, 498, 516, 534
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 6 cut(s) 125, 206, 397, 439, 493, 520
NdeI CATATG 1 cut(s) 202
NdeII GATC 3 cut(s) 314, 498, 638
NlaIII CATG 2 cut(s) 323, 533
NlaIV GGNNCC 2 cut(s) 94, 219
NmuCI GTSAC 1 cut(s) 230
NspI RCATGY 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 622
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 94, 219
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PsuI RGATCY 2 cut(s) 498, 638
SapI GCTCTTC 1 cut(s) 381
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 3 cut(s) 314, 498, 638
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 374
SfaNI GCATC 2 cut(s) 177, 447
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 218
Sse9I AATT 4 cut(s) 49, 153, 288, 350
SsiI CCGC 2 cut(s) 243, 494
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 61, 115, 620
TasI AATT 4 cut(s) 49, 153, 288, 350
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 3 cut(s) 216, 241, 550
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 606
TspRI CASTG 3 cut(s) 216, 241, 550
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 533
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.