Rroxscaffold_5G00358110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001007
Physical Location & Seq
Forward (+)
38099157 .. 38101416
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00358110.1

Sequence Viewer

Length: 903 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTTCGCTAATGTCACAGGCAAAACTACCAAAGTACGTGGTAAAGGAATATGTACTTTGATGGAAGATAACAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACATTGGGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTAGCACCAAGAGTTATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACATGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGTTAGAGTCCAAGTACCAACAATAACAAGAGCAAGCACGGGTGCACAACCATCCTTCCGTATGCCTTCTTATCCTCCTCAAATGTACCGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACCGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

300

Amino Acids

34.06

Weight (kDa)

9.23

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 137 - 211 2.6e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 225, 598
AciI CCGC 3 cut(s) 223, 598, 746
AclWI GGATC 3 cut(s) 371, 518, 898
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 421
AcuI CTGAAG 2 cut(s) 30, 297
AfaI GTAC 5 cut(s) 84, 103, 191, 663, 734
AfiI CCNNNNNNNGG 3 cut(s) 193, 386, 797
AflII CTTAAG 1 cut(s) 359
AgsI TTSAA 4 cut(s) 142, 266, 647, 853
AjnI CCWGG 2 cut(s) 394, 575
AluBI AGCT 6 cut(s) 206, 345, 368, 859, 866, 882
AluI AGCT 6 cut(s) 206, 345, 368, 859, 866, 882
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 3 cut(s) 371, 518, 898
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 3 cut(s) 184, 241, 737
ApaLI GTGCAC 1 cut(s) 690
ApoI RAATTY 2 cut(s) 179, 421
Asp700I GAANNNNTTC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 134, 207
BaeGI GKGCMC 1 cut(s) 694
BaeI ACNNNNGTAYC 4 cut(s) 181, 214, 816, 849
BanII GRGCYC 1 cut(s) 522
BauI CACGAG 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 694
BccI CCATC 3 cut(s) 103, 167, 706
BciT130I CCWGG 2 cut(s) 396, 577
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 462
BfrI CTTAAG 1 cut(s) 359
BglII AGATCT 2 cut(s) 280, 750
BlpI GCTNAGC 1 cut(s) 594
Bme1390I CCNGG 2 cut(s) 396, 577
BmeT110I CYCGRG 2 cut(s) 134, 207
BmrFI CCNGG 2 cut(s) 396, 577
Bpu1102I GCTNAGC 1 cut(s) 594
BpuEI CTTGAG 2 cut(s) 237, 485
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 1 cut(s) 797
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 386, 797
Bse118I RCCGGY 2 cut(s) 186, 735
Bse1I ACTGG 1 cut(s) 811
BseBI CCWGG 2 cut(s) 396, 577
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 698
BseLI CCNNNNNNNGG 3 cut(s) 193, 386, 797
BseMII CTCAG 3 cut(s) 405, 585, 885
BseNI ACTGG 1 cut(s) 811
BseRI GAGGAG 1 cut(s) 714
BseSI GKGCMC 1 cut(s) 694
BshFI GGCC 3 cut(s) 186, 243, 739
BsiHKAI GWGCWC 1 cut(s) 694
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 3 cut(s) 187, 736, 798
BslI CCNNNNNNNGG 3 cut(s) 193, 386, 797
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 3 cut(s) 186, 243, 739
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp1286I GDGCHC 2 cut(s) 522, 694
Bsp143I GATC 5 cut(s) 280, 376, 523, 750, 890
Bsp1720I GCTNAGC 1 cut(s) 594
BspACI CCGC 3 cut(s) 223, 598, 746
BspANI GGCC 3 cut(s) 186, 243, 739
BspCNI CTCAG 3 cut(s) 406, 586, 886
BspHI TCATGA 1 cut(s) 514
BspPI GGATC 3 cut(s) 371, 518, 898
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 2 cut(s) 225, 598
BsrFI RCCGGY 2 cut(s) 186, 735
BsrI ACTGG 1 cut(s) 811
BssAI RCCGGY 2 cut(s) 186, 735
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 5 cut(s) 280, 376, 523, 750, 890
BssSI CACGAG 1 cut(s) 885
BssT1I CCWWGG 1 cut(s) 238
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 2 cut(s) 396, 577
BstAFI CTTAAG 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 481, 682
BstDEI CTNAG 5 cut(s) 44, 414, 594, 860, 894
BstF5I GGATG 1 cut(s) 698
BstKTI GATC 5 cut(s) 283, 379, 526, 753, 893
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 5 cut(s) 280, 376, 523, 750, 890
BstMWI GCNNNNNNNGC 2 cut(s) 745, 772
BstNI CCWGG 2 cut(s) 396, 577
BstNSI RCATGY 2 cut(s) 608, 785
BstSCI CCNGG 2 cut(s) 394, 575
BstSLI GKGCMC 1 cut(s) 694
BstX2I RGATCY 3 cut(s) 280, 750, 890
BstXI CCANNNNNNTGG 1 cut(s) 402
BstYI RGATCY 3 cut(s) 280, 750, 890
BsuRI GGCC 3 cut(s) 186, 243, 739
BtsCI GGATG 1 cut(s) 698
Cac8I GCNNGC 2 cut(s) 481, 682
CciI TCATGA 1 cut(s) 514
Cfr10I RCCGGY 2 cut(s) 186, 735
Csp6I GTAC 5 cut(s) 83, 102, 190, 662, 733
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 6 cut(s) 21, 509, 515, 555, 605, 782
CviQI GTAC 5 cut(s) 83, 102, 190, 662, 733
DdeI CTNAG 5 cut(s) 44, 414, 594, 860, 894
DpnI GATC 5 cut(s) 282, 378, 525, 752, 892
DpnII GATC 5 cut(s) 280, 376, 523, 750, 890
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 30, 297
Eco88I CYCGRG 2 cut(s) 134, 207
EcoRI GAATTC 1 cut(s) 421
EcoRII CCWGG 2 cut(s) 394, 575
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 6 cut(s) 24, 512, 518, 558, 608, 785
FatI CATG 6 cut(s) 20, 508, 514, 554, 604, 781
FokI GGATG 1 cut(s) 685
FriOI GRGCYC 1 cut(s) 522
FspBI CTAG 1 cut(s) 462
HaeIII GGCC 3 cut(s) 186, 243, 739
HapII CCGG 3 cut(s) 187, 736, 798
Hin1II CATG 6 cut(s) 24, 512, 518, 558, 608, 785
HinfI GANTC 4 cut(s) 128, 212, 654, 874
HpaII CCGG 3 cut(s) 187, 736, 798
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 2 cut(s) 10, 895
Hpy188III TCNNGA 3 cut(s) 209, 502, 515
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 4 cut(s) 20, 32, 712, 723
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 428, 479, 616, 692
HpyF10VI GCNNNNNNNGC 2 cut(s) 745, 772
HpyF3I CTNAG 5 cut(s) 44, 414, 594, 860, 894
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 6 cut(s) 24, 512, 518, 558, 608, 785
Kzo9I GATC 5 cut(s) 280, 376, 523, 750, 890
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 61, 228
MalI GATC 5 cut(s) 282, 378, 525, 752, 892
MbiI CCGCTC 2 cut(s) 225, 598
MboI GATC 5 cut(s) 280, 376, 523, 750, 890
MboII GAAGA 5 cut(s) 23, 125, 275, 290, 430
MflI RGATCY 3 cut(s) 280, 750, 890
MhlI GDGCHC 2 cut(s) 522, 694
MluCI AATT 5 cut(s) 142, 179, 408, 421, 633
MlyI GAGTC 1 cut(s) 663
MnlI CCTC 9 cut(s) 143, 297, 306, 469, 732, 735, 750, 768, 786
MroXI GAANNNNTTC 1 cut(s) 282
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 513
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 3 cut(s) 187, 736, 798
MspR9I CCNGG 2 cut(s) 396, 577
MvaI CCWGG 2 cut(s) 396, 577
MwoI GCNNNNNNNGC 2 cut(s) 745, 772
NdeII GATC 5 cut(s) 280, 376, 523, 750, 890
NlaIII CATG 6 cut(s) 24, 512, 518, 558, 608, 785
NmuCI GTSAC 2 cut(s) 61, 228
NspI RCATGY 2 cut(s) 608, 785
PaeR7I CTCGAG 2 cut(s) 134, 207
PagI TCATGA 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 128, 212, 874
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
Ppu21I YACGTR 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 394, 575
PspGI CCWGG 2 cut(s) 394, 575
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 3 cut(s) 280, 750, 890
RsaI GTAC 5 cut(s) 84, 103, 191, 663, 734
RsaNI GTAC 5 cut(s) 83, 102, 190, 662, 733
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 360
Sau3AI GATC 5 cut(s) 280, 376, 523, 750, 890
SchI GAGTC 1 cut(s) 663
ScrFI CCNGG 2 cut(s) 396, 577
SduI GDGCHC 2 cut(s) 522, 694
Sfr274I CTCGAG 2 cut(s) 134, 207
SlaI CTCGAG 2 cut(s) 134, 207
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 5 cut(s) 134, 207, 252, 359, 500
SmoI CTYRAG 5 cut(s) 134, 207, 252, 359, 500
Sse9I AATT 5 cut(s) 142, 179, 408, 421, 633
SsiI CCGC 3 cut(s) 223, 598, 746
SspI AATATT 1 cut(s) 335
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 394, 575
StyI CCWWGG 1 cut(s) 238
TaiI ACGT 1 cut(s) 88
TaqI TCGA 5 cut(s) 135, 208, 433, 487, 872
TasI AATT 5 cut(s) 142, 179, 408, 421, 633
TatI WGTACW 1 cut(s) 101
TfiI GAWTC 3 cut(s) 128, 212, 874
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 2 cut(s) 61, 228
Tsp45I GTSAC 2 cut(s) 61, 228
TspDTI ATGAA 3 cut(s) 9, 600, 858
TspGWI ACGGA 1 cut(s) 695
Vha464I CTTAAG 1 cut(s) 359
VneI GTGCAC 1 cut(s) 690
XapI RAATTY 2 cut(s) 179, 421
XceI RCATGY 2 cut(s) 608, 785
XhoI CTCGAG 2 cut(s) 134, 207
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.