Rh7CG439800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001007
Physical Location & Seq
Forward (+)
57590270 .. 57592485
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG439800.1

Sequence Viewer

Length: 324 bp
ATGGGTGATAGTATCATGTGCGGAGTGTACAGTAGAGAGAGTTGGAGCTATTTCCAGCGACTTCGATTAGTGCTCGGTTCACTTCACCGACTTTGCCCTCAACCATTATGTGCCGCCGAGAGCTGTCGTCAAGAAAACTTTGGTGCCGGAAAGCTCACTGCGGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCGGTGATGGGACCTGAGAAACGTCACAGAGTTTGCGGTTATGGACTAGGTATAATACCTGATATGGTGCCTTATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

107

Amino Acids

11.9

Weight (kDa)

6.71

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 143, 310
AciI CCGC 5 cut(s) 21, 114, 161, 245, 279
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 3 cut(s) 48, 123, 154
AluI AGCT 3 cut(s) 48, 123, 154
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 17, 77, 259
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 143, 310
Bbv12I GWGCWC 1 cut(s) 75
BccI CCATC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 2 cut(s) 114, 162
BlsI GCNGC 2 cut(s) 115, 163
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 145, 255, 312
BmsI GCATC 1 cut(s) 213
BseMII CTCAG 1 cut(s) 249
BshNI GGYRCC 2 cut(s) 143, 310
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 75
Bsp1407I TGTACA 1 cut(s) 27
BspACI CCGC 5 cut(s) 21, 114, 161, 245, 279
BspCNI CTCAG 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 145, 255, 312
BspT107I GGYRCC 2 cut(s) 143, 310
BsrGI TGTACA 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 258
BstMAI GTCTC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 48, 123, 154, 164
CviKI_1 RGCY 4 cut(s) 48, 123, 154, 164
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 254
FaeI CATG 1 cut(s) 19
FaiI YATR 8 cut(s) 17, 109, 170, 238, 240, 285, 296, 308
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 15
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 114, 162
Fsp4HI GCNGC 2 cut(s) 114, 162
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 114, 162
HapII CCGG 1 cut(s) 147
Hin1II CATG 1 cut(s) 19
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 17, 77, 259
Hpy166II GTNNAC 2 cut(s) 28, 80
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 28, 80
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 172, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 19
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 68, 150, 160, 270, 315
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 1 cut(s) 108
MseI TTAA 1 cut(s) 322
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeI CATATG 1 cut(s) 238
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 3 cut(s) 145, 255, 312
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 266
PkrI GCNGC 2 cut(s) 115, 163
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 3 cut(s) 145, 255, 312
PspPI GGNCC 1 cut(s) 254
PspPPI RGGWCCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 322
SatI GCNGC 2 cut(s) 114, 162
Sau96I GGNCC 1 cut(s) 254
SduI GDGCHC 1 cut(s) 75
SetI ASST 8 cut(s) 50, 125, 156, 208, 259, 268, 295, 304
SfaNI GCATC 1 cut(s) 213
SfcI CTRYAG 1 cut(s) 216
SinI GGWCC 1 cut(s) 254
Sse9I AATT 1 cut(s) 189
SsiI CCGC 5 cut(s) 21, 114, 161, 245, 279
SspMI CTAG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 64
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 27
TauI GCSGC 2 cut(s) 116, 164
Tru1I TTAA 1 cut(s) 322
Tru9I TTAA 1 cut(s) 322
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 266
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 254
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.