Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007367.1

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

3698 .. 5714

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007367.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgggtgttagtgtaggttctaatgatggaaaatttggccggtacttgggtgggttagctcgagattctaatgtacttccgctcgtcactaaaccttggcctaaagtctcaagtactattaaagatcccttatgggaccaaatatatgcaactattgaatggaaacctgaagatcttcctcgtctacctctcataaagcataatataatggaaagagtggctaaatattggagaagctacaagaacagacttaagaaagctcattatcatcccaaaataggcacaccaggacgttgggtgtgtgggaataaagatgtcaacgcagctgaatggcgcgaaatggtgaaatattgggatactgaaaagacaacagctggtatgcaagagaagttggcagaaattgtagcagttgaaggtaatgagactacagagatgcgagaaagagcatgtgttgcagtgatgggacctgagaaacgtcatagagttcgtggttatggactaggtgtaatacctgatatggtgccttatcttcaaattgatggtagctcatcatcacacagatcacatggaagacattatgctcacttgcagtcacaatttatggagttagagtccaagtaccaacaacaacaacagcaagcacaggtgcagcaagttcaaactcaggaacaactcttgcaaacccaacaagaattggcaatgttaaagcaaatgatacaatcccagcaatctactccaccttcgcaacaatcttctcagcctttgcagcaaccatccttccagatgccttcttatcctcctcaaatgtactggcctcaaccgcatatctatcctcaaatgccttatcagcctcaacatgcttatcctaccactggactaactggattgcttatgggagatacaagtgtccaagaaactgatttgttgaaccagcttagagcttcatcgaatcaaagctctcgtggatctgagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

325

Amino Acids

37.22

Weight (kDa)

9.0

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	520
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	1 cut(s)	336
AciI	CCGC	2 cut(s)	80, 821
AclWI	GGATC	2 cut(s)	119, 973
AcoI	YGGCCR	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	5 cut(s)	44, 75, 115, 620, 809
AfiI	CCNNNNNNNGG	3 cut(s)	46, 278, 872
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	158, 413, 533, 659, 928
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	9 cut(s)	59, 237, 260, 326, 374, 546, 934, 941, 957
AluI	AGCT	9 cut(s)	59, 237, 260, 326, 374, 546, 934, 941, 957
Alw26I	GTCTC	2 cut(s)	112, 416
AlwI	GGATC	2 cut(s)	119, 973
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	3 cut(s)	37, 98, 812
ApeKI	GCWGC	3 cut(s)	323, 649, 766
ApoI	RAATTY	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	136, 464
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	136, 464
BaeI	ACNNNNGTAYC	4 cut(s)	34, 67, 891, 924
BanI	GGYRCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	960
BbsI	GAAGAC	1 cut(s)	577
BbvI	GCAGC	3 cut(s)	335, 661, 778
BccI	CCATC	4 cut(s)	20, 454, 533, 781
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	112, 416
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	3 cut(s)	324, 650, 767
BlsI	GCNGC	3 cut(s)	325, 651, 768
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	136, 464
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	136, 464
BmiI	GGNNCC	3 cut(s)	137, 465, 522
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	423, 774
BpiI	GAAGAC	1 cut(s)	577
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 278, 872
Bse118I	RCCGGY	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	815, 877, 886
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	268, 773
BseLI	CCNNNNNNNGG	3 cut(s)	46, 278, 872
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	4 cut(s)	459, 677, 770, 960
BseNI	ACTGG	3 cut(s)	815, 877, 886
BseRI	GAGGAG	1 cut(s)	789
BseXI	GCAGC	3 cut(s)	335, 661, 778
BseYI	CCCAGC	1 cut(s)	723
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	39, 100, 814
BshNI	GGYRCC	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	149, 477
BslI	CCNNNNNNNGG	3 cut(s)	46, 278, 872
BsmAI	GTCTC	2 cut(s)	112, 416
BsmFI	GGGAC	2 cut(s)	149, 477
BsnI	GGCC	3 cut(s)	39, 100, 814
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	4 cut(s)	124, 172, 560, 965
BspACI	CCGC	2 cut(s)	80, 821
BspANI	GGCC	3 cut(s)	39, 100, 814
BspCNI	CTCAG	4 cut(s)	460, 676, 769, 961
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	137, 465, 522
BspPI	GGATC	2 cut(s)	119, 973
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	705
BsrFI	RCCGGY	1 cut(s)	39
BsrI	ACTGG	3 cut(s)	815, 877, 886
BssAI	RCCGGY	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	4 cut(s)	124, 172, 560, 965
BssSI	CACGAG	1 cut(s)	960
BssT1I	CCWWGG	1 cut(s)	95
Bst2BI	CACGAG	1 cut(s)	960
Bst2UI	CCWGG	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	5 cut(s)	468, 663, 756, 935, 969
BstF5I	GGATG	2 cut(s)	268, 773
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	4 cut(s)	127, 175, 563, 968
BstMAI	GTCTC	2 cut(s)	112, 416
BstMBI	GATC	4 cut(s)	124, 172, 560, 965
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 766, 820, 847
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	450, 860
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	3 cut(s)	335, 661, 778
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	3 cut(s)	124, 172, 965
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	3 cut(s)	124, 172, 965
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	39, 100, 814
BtsCI	GGATG	2 cut(s)	268, 773
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 870
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	136, 464
Csp6I	GTAC	5 cut(s)	43, 74, 114, 619, 808
CviAII	CATG	3 cut(s)	447, 566, 857
CviQI	GTAC	5 cut(s)	43, 74, 114, 619, 808
DdeI	CTNAG	5 cut(s)	468, 663, 756, 935, 969
DpnI	GATC	4 cut(s)	126, 174, 562, 967
DpnII	GATC	4 cut(s)	124, 172, 560, 965
EaeI	YGGCCR	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	136, 464
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	3 cut(s)	450, 569, 860
FaqI	GGGAC	2 cut(s)	149, 477
FatI	CATG	3 cut(s)	446, 565, 856
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	324, 650, 767
FokI	GGATG	2 cut(s)	255, 760
Fsp4HI	GCNGC	3 cut(s)	324, 650, 767
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	324, 650, 767
GsaI	CCCAGC	1 cut(s)	727
HaeIII	GGCC	3 cut(s)	39, 100, 814
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	450, 569, 860
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	65, 611, 949
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	185, 319
Hpy188I	TCNGA	1 cut(s)	970
Hpy188III	TCNNGA	3 cut(s)	62, 665, 781
Hpy8I	GTNNAC	2 cut(s)	185, 319
HpyAV	CCTTC	4 cut(s)	407, 750, 787, 798
HpyCH4IV	ACGT	2 cut(s)	292, 475
HpyCH4V	TGCA	7 cut(s)	149, 382, 455, 589, 649, 679, 766
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 766, 820, 847
HpyF3I	CTNAG	5 cut(s)	468, 663, 756, 935, 969
HpySE526I	ACGT	2 cut(s)	292, 475
Hsp92II	CATG	3 cut(s)	450, 569, 860
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	124, 172, 560, 965
Lsp1109I	GCAGC	3 cut(s)	335, 661, 778
LweI	GCATC	2 cut(s)	423, 774
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	292, 475
MaeIII	GTNAC	2 cut(s)	85, 591
MalI	GATC	4 cut(s)	126, 174, 562, 967
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	4 cut(s)	124, 172, 560, 965
MboII	GAAGA	5 cut(s)	167, 182, 521, 582, 744
MflI	RGATCY	3 cut(s)	124, 172, 965
MluCI	AATT	5 cut(s)	32, 399, 534, 596, 692
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	7 cut(s)	189, 198, 807, 810, 825, 843, 861
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	120, 252, 704
MspA1I	CMGCKG	2 cut(s)	326, 374
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	452, 766, 820, 847
NdeII	GATC	4 cut(s)	124, 172, 560, 965
NlaIII	CATG	3 cut(s)	450, 569, 860
NlaIV	GGNNCC	3 cut(s)	137, 465, 522
NmuCI	GTSAC	2 cut(s)	85, 591
NspI	RCATGY	2 cut(s)	450, 860
PaeR7I	CTCGAG	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	65, 949
PkrI	GCNGC	3 cut(s)	325, 651, 768
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PpuMI	RGGWCCY	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	137, 465, 522
PspPI	GGNCC	2 cut(s)	136, 464
PspPPI	RGGWCCY	1 cut(s)	464
PsuI	RGATCY	3 cut(s)	124, 172, 965
PvuII	CAGCTG	2 cut(s)	326, 374
RsaI	GTAC	5 cut(s)	44, 75, 115, 620, 809
RsaNI	GTAC	5 cut(s)	43, 74, 114, 619, 808
SaqAI	TTAA	3 cut(s)	120, 252, 704
SatI	GCNGC	3 cut(s)	324, 650, 767
Sau3AI	GATC	4 cut(s)	124, 172, 560, 965
Sau96I	GGNCC	2 cut(s)	136, 464
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	288
SfaNI	GCATC	2 cut(s)	423, 774
SfcI	CTRYAG	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	136, 464
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	3 cut(s)	60, 109, 251
SmoI	CTYRAG	3 cut(s)	60, 109, 251
Sse9I	AATT	5 cut(s)	32, 399, 534, 596, 692
SsiI	CCGC	2 cut(s)	80, 821
SspI	AATATT	2 cut(s)	227, 350
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	95
TaiI	ACGT	2 cut(s)	295, 478
TaqI	TCGA	2 cut(s)	61, 947
TasI	AATT	5 cut(s)	32, 399, 534, 596, 692
TatI	WGTACW	3 cut(s)	73, 113, 807
TfiI	GAWTC	2 cut(s)	65, 949
Tru1I	TTAA	3 cut(s)	120, 252, 704
Tru9I	TTAA	3 cut(s)	120, 252, 704
TscAI	CASTG	2 cut(s)	462, 877
TseFI	GTSAC	2 cut(s)	85, 591
TseI	GCWGC	3 cut(s)	323, 649, 766
Tsp45I	GTSAC	2 cut(s)	85, 591
TspDTI	ATGAA	1 cut(s)	933
TspRI	CASTG	2 cut(s)	462, 877
Vha464I	CTTAAG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	136, 464
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	2 cut(s)	450, 860
XhoI	CTCGAG	1 cut(s)	60
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.