Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008552.1

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Reverse (-)

1472 .. 2071

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008552.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgcaagagaagttggcagaaattgtagcagttgaaggtaatgagactacagagatgcgagaaagagcgtatgttgcagtgatgggacctgagaaacgtcacaaagttcgcggttatggactaggtgtaatacctgatatggtgccttatcttcaaattgatggtagctcatcatcacatagatcacatggaagacattatgctcaattgcagtcacaatttatggagttagagtccaagtaccaacaacaacaagagcaggcacaggtgcagcaagttcaaactcaggaacaactcttgcaaacccaacaagaattggcaatgttaaagcaaatgatacaatcccagcaatctactccaccttcacaacaatcttctcagtctttgcagcaaccatccttccagatgccttcttatcctcctcaaatgtactggcctcaaccgcagatctatcctcaaatgccttatcagcctcaacatgcttatcctaccactggactaactggattgcttatgggagatacaagtgtccaagaaactgatttgttgaaccagcttagagcttcatcgaatcaaagctctcgtggatctgagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

199

Amino Acids

22.69

Weight (kDa)

5.5

Isoelectric Point (pI)

83.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	111, 443
AclWI	GGATC	1 cut(s)	595
AfaI	GTAC	2 cut(s)	242, 431
AfiI	CCNNNNNNNGG	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	35, 155, 281, 550
AluBI	AGCT	4 cut(s)	168, 556, 563, 579
AluI	AGCT	4 cut(s)	168, 556, 563, 579
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	595
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	2 cut(s)	271, 388
AspS9I	GGNCC	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	86
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BanI	GGYRCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	283, 400
BccI	CCATC	3 cut(s)	76, 155, 403
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	48
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	2 cut(s)	272, 389
BlsI	GCNGC	2 cut(s)	273, 390
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	87, 144
BmsI	GCATC	2 cut(s)	45, 396
BpiI	GAAGAC	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	3 cut(s)	437, 499, 508
Bse3DI	GCAATG	1 cut(s)	327
BseGI	GGATG	1 cut(s)	395
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	4 cut(s)	81, 299, 392, 582
BseNI	ACTGG	3 cut(s)	437, 499, 508
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	283, 400
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	436
BshNI	GGYRCC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	182, 447, 587
BspACI	CCGC	2 cut(s)	111, 443
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	4 cut(s)	82, 298, 391, 583
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	87, 144
BspPI	GGATC	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	3 cut(s)	437, 499, 508
BssMI	GATC	3 cut(s)	182, 447, 587
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	5 cut(s)	90, 285, 378, 557, 591
BstF5I	GGATG	1 cut(s)	395
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	3 cut(s)	185, 450, 590
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	3 cut(s)	182, 447, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 442, 469
BstNSI	RCATGY	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	283, 400
BstV2I	GAAGAC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	447, 587
BstYI	RGATCY	2 cut(s)	447, 587
BsuRI	GGCC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	395
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 492
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	241, 430
CviAII	CATG	2 cut(s)	188, 479
CviJI	RGCY	6 cut(s)	168, 436, 472, 556, 563, 579
CviKI_1	RGCY	6 cut(s)	168, 436, 472, 556, 563, 579
CviQI	GTAC	2 cut(s)	241, 430
DdeI	CTNAG	5 cut(s)	90, 285, 378, 557, 591
DpnI	GATC	3 cut(s)	184, 449, 589
DpnII	GATC	3 cut(s)	182, 447, 587
Eco47I	GGWCC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	86
FaeI	CATG	2 cut(s)	191, 482
FaiI	YATR	9 cut(s)	72, 117, 140, 180, 189, 201, 224, 480, 515
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	187, 478
Fnu4HI	GCNGC	2 cut(s)	272, 389
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	272, 389
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	2 cut(s)	272, 389
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	436
Hin1II	CATG	2 cut(s)	191, 482
HinfI	GANTC	2 cut(s)	233, 571
Hpy188I	TCNGA	1 cut(s)	592
Hpy188III	TCNNGA	2 cut(s)	287, 403
HpyAV	CCTTC	4 cut(s)	29, 372, 409, 420
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	4, 77, 211, 271, 301, 388
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 442, 469
HpyF3I	CTNAG	5 cut(s)	90, 285, 378, 557, 591
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	191, 482
Kzo9I	GATC	3 cut(s)	182, 447, 587
Lsp1109I	GCAGC	2 cut(s)	283, 400
LweI	GCATC	2 cut(s)	45, 396
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	98, 213
MalI	GATC	3 cut(s)	184, 449, 589
MboI	GATC	3 cut(s)	182, 447, 587
MboII	GAAGA	3 cut(s)	143, 204, 366
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	2 cut(s)	447, 587
MluCI	AATT	5 cut(s)	21, 156, 206, 218, 314
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	429, 432, 447, 465, 483
MseI	TTAA	1 cut(s)	326
MunI	CAATTG	1 cut(s)	206
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	74, 442, 469
NdeII	GATC	3 cut(s)	182, 447, 587
NlaIII	CATG	2 cut(s)	191, 482
NlaIV	GGNNCC	2 cut(s)	87, 144
NmuCI	GTSAC	2 cut(s)	98, 213
NspI	RCATGY	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	273, 390
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	87, 144
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	447, 587
RsaI	GTAC	2 cut(s)	242, 431
RsaNI	GTAC	2 cut(s)	241, 430
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	272, 389
Sau3AI	GATC	3 cut(s)	182, 447, 587
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	242
SfaNI	GCATC	2 cut(s)	45, 396
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	5 cut(s)	21, 156, 206, 218, 314
SsiI	CCGC	2 cut(s)	111, 443
SspMI	CTAG	1 cut(s)	122
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	569
TasI	AATT	5 cut(s)	21, 156, 206, 218, 314
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	84, 499
TseFI	GTSAC	2 cut(s)	98, 213
TseI	GCWGC	2 cut(s)	271, 388
Tsp45I	GTSAC	2 cut(s)	98, 213
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	2 cut(s)	84, 499
VpaK11BI	GGWCC	1 cut(s)	86
XceI	RCATGY	1 cut(s)	482
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.