Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Reverse (-)

80847209 .. 80853890

Gene Structure 6682 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCTGGTACCAAGGTGAATGTTGTTGGTTCCAAGGTGAATGCTGCTGGTTCGAGGTCGAATGCTGAGTTGCAAACTAGTCTGTCAGCTAATTTCACGGGTTTAGGACGTACTTCAAACAAAAGGTTTCATGCCTTTGTCCAGTTTGTGGGCTTTTGCTGTTTAGTGTACAGTAGAGAGTTGGAGCTATGCGATATTTGGTGCTATGTTTGTGCAGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAAGCACATGTGCAACAAGTTCAAACTCAGGAACAACTCTTGAAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCGCAACAATCTTCTCAACCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAAATGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCTTTTGGAACAAGAATTGAGGCTATTGAGAGATCGACTACCAAACTGTGCTGTGCCATATGCTGCAGGCCTGCAGCTACTAGTACGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

295

Amino Acids

33.2

Weight (kDa)

7.66

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	8
AccB1I	GGYRCC	2 cut(s)	8, 364
AccB7I	CCANNNNNTGG	1 cut(s)	148
AciI	CCGC	1 cut(s)	656
AfaI	GTAC	6 cut(s)	10, 112, 170, 464, 644, 879
AfiI	CCNNNNNNNGG	2 cut(s)	148, 707
AflIII	ACRYGT	1 cut(s)	478
AgsI	TTSAA	6 cut(s)	117, 257, 377, 494, 514, 763
AhlI	ACTAGT	2 cut(s)	77, 874
AluBI	AGCT	8 cut(s)	89, 187, 218, 390, 769, 776, 792, 871
AluI	AGCT	8 cut(s)	89, 187, 218, 390, 769, 776, 792, 871
Alw26I	GTCTC	1 cut(s)	260
AoxI	GGCC	2 cut(s)	647, 862
ApeKI	GCWGC	5 cut(s)	44, 215, 601, 857, 868
Asp718I	GGTACC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	28, 49
AvaII	GGWCC	1 cut(s)	308
BaeI	ACNNNNGTAYC	3 cut(s)	33, 726, 759
BanI	GGYRCC	2 cut(s)	8, 364
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	5 cut(s)	31, 227, 613, 844, 880
BccI	CCATC	3 cut(s)	298, 377, 616
BcoDI	GTCTC	1 cut(s)	260
BcuI	ACTAGT	2 cut(s)	77, 874
BfaI	CTAG	3 cut(s)	78, 344, 875
BfmI	CTRYAG	3 cut(s)	270, 858, 866
BglII	AGATCT	1 cut(s)	660
BisI	GCNGC	5 cut(s)	45, 216, 602, 858, 869
BlsI	GCNGC	5 cut(s)	46, 217, 603, 859, 870
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	4 cut(s)	10, 31, 309, 366
BmsI	GCATC	2 cut(s)	267, 609
BpiI	GAAGAC	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	881
BsaJI	CCNNGG	2 cut(s)	12, 33
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 707
Bse1I	ACTGG	3 cut(s)	142, 650, 712
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	12, 33
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	2 cut(s)	148, 707
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	3 cut(s)	57, 303, 512
BseNI	ACTGG	3 cut(s)	142, 650, 712
BseRI	GAGGAG	1 cut(s)	624
BseXI	GCAGC	5 cut(s)	31, 227, 613, 844, 880
BseYI	CCCAGC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	649, 864
BshNI	GGYRCC	2 cut(s)	8, 364
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	148, 707
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	46, 67
BsnI	GGCC	2 cut(s)	649, 864
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	404, 660, 826
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	649, 864
BspCNI	CTCAG	3 cut(s)	58, 304, 511
BspLI	GGNNCC	4 cut(s)	10, 31, 309, 366
BspMAI	CTGCAG	2 cut(s)	862, 870
BspT107I	GGYRCC	2 cut(s)	8, 364
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	142, 650, 712
BssECI	CCNNGG	2 cut(s)	12, 33
BssMI	GATC	3 cut(s)	404, 660, 826
BssT1I	CCWWGG	2 cut(s)	12, 33
Bst4CI	ACNGT	2 cut(s)	173, 842
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	881
BstC8I	GCNNGC	2 cut(s)	862, 866
BstDEI	CTNAG	4 cut(s)	66, 312, 498, 770
BstF5I	GGATG	1 cut(s)	608
BstKTI	GATC	3 cut(s)	407, 663, 829
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	3 cut(s)	404, 660, 826
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 655, 682
BstNSI	RCATGY	2 cut(s)	482, 695
BstSFI	CTRYAG	3 cut(s)	270, 858, 866
BstSNI	TACGTA	1 cut(s)	881
BstV1I	GCAGC	5 cut(s)	31, 227, 613, 844, 880
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	649, 864
BtsCI	GGATG	1 cut(s)	608
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 705
Cac8I	GCNNGC	2 cut(s)	862, 866
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	6 cut(s)	9, 111, 169, 463, 643, 878
CviAII	CATG	4 cut(s)	131, 410, 479, 692
CviQI	GTAC	6 cut(s)	9, 111, 169, 463, 643, 878
DdeI	CTNAG	4 cut(s)	66, 312, 498, 770
DpnI	GATC	3 cut(s)	406, 662, 828
DpnII	GATC	3 cut(s)	404, 660, 826
Eco105I	TACGTA	1 cut(s)	881
Eco130I	CCWWGG	2 cut(s)	12, 33
Eco147I	AGGCCT	1 cut(s)	864
Eco47I	GGWCC	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	308
EcoT14I	CCWWGG	2 cut(s)	12, 33
ErhI	CCWWGG	2 cut(s)	12, 33
FaeI	CATG	4 cut(s)	134, 413, 482, 695
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	4 cut(s)	130, 409, 478, 691
FauNDI	CATATG	2 cut(s)	292, 853
Fnu4HI	GCNGC	5 cut(s)	45, 216, 602, 858, 869
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	5 cut(s)	45, 216, 602, 858, 869
FspBI	CTAG	3 cut(s)	78, 344, 875
GluI	GCNGC	5 cut(s)	45, 216, 602, 858, 869
GsaI	CCCAGC	1 cut(s)	562
HaeIII	GGCC	2 cut(s)	649, 864
Hin1II	CATG	4 cut(s)	134, 413, 482, 695
HinfI	GANTC	2 cut(s)	455, 784
HphI	GGTGA	2 cut(s)	28, 49
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	500, 511, 616
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	251, 585, 622, 633
HpyCH4III	ACNGT	2 cut(s)	173, 842
HpyCH4IV	ACGT	3 cut(s)	109, 319, 880
HpyCH4V	TGCA	9 cut(s)	73, 215, 226, 299, 433, 484, 601, 860, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 655, 682
HpyF3I	CTNAG	4 cut(s)	66, 312, 498, 770
HpySE526I	ACGT	3 cut(s)	109, 319, 880
Hsp92II	CATG	4 cut(s)	134, 413, 482, 695
KpnI	GGTACC	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	404, 660, 826
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	5 cut(s)	31, 227, 613, 844, 880
LweI	GCATC	2 cut(s)	267, 609
MaeI	CTAG	3 cut(s)	78, 344, 875
MaeII	ACGT	3 cut(s)	109, 319, 880
MaeIII	GTNAC	2 cut(s)	320, 435
MalI	GATC	3 cut(s)	406, 662, 828
MboI	GATC	3 cut(s)	404, 660, 826
MboII	GAAGA	3 cut(s)	365, 426, 579
MflI	RGATCY	1 cut(s)	660
MluCI	AATT	6 cut(s)	91, 243, 378, 440, 527, 809
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	48, 642, 645, 660, 678, 696, 807
MseI	TTAA	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	218
Mva1269I	GAATGC	2 cut(s)	46, 67
MwoI	GCNNNNNNNGC	3 cut(s)	296, 655, 682
NdeI	CATATG	2 cut(s)	292, 853
NdeII	GATC	3 cut(s)	404, 660, 826
NlaIII	CATG	4 cut(s)	134, 413, 482, 695
NlaIV	GGNNCC	4 cut(s)	10, 31, 309, 366
NmuCI	GTSAC	2 cut(s)	320, 435
NspI	RCATGY	2 cut(s)	482, 695
PceI	AGGCCT	1 cut(s)	864
PciI	ACATGT	1 cut(s)	478
PctI	GAATGC	2 cut(s)	46, 67
PfeI	GAWTC	1 cut(s)	784
PflMI	CCANNNNNTGG	1 cut(s)	148
PkrI	GCNGC	5 cut(s)	46, 217, 603, 859, 870
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	881
PpuMI	RGGWCCY	1 cut(s)	308
PscI	ACATGT	1 cut(s)	478
Psp5II	RGGWCCY	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	10, 31, 309, 366
PspPI	GGNCC	1 cut(s)	308
PspPPI	RGGWCCY	1 cut(s)	308
PstI	CTGCAG	2 cut(s)	862, 870
PsuI	RGATCY	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	6 cut(s)	10, 112, 170, 464, 644, 879
RsaNI	GTAC	6 cut(s)	9, 111, 169, 463, 643, 878
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	5 cut(s)	45, 216, 602, 858, 869
Sau3AI	GATC	3 cut(s)	404, 660, 826
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	464
SfaNI	GCATC	2 cut(s)	267, 609
SfcI	CTRYAG	3 cut(s)	270, 858, 866
SinI	GGWCC	1 cut(s)	308
SnaBI	TACGTA	1 cut(s)	881
SpeI	ACTAGT	2 cut(s)	77, 874
Sse9I	AATT	6 cut(s)	91, 243, 378, 440, 527, 809
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	3 cut(s)	78, 344, 875
StuI	AGGCCT	1 cut(s)	864
StyI	CCWWGG	2 cut(s)	12, 33
TaaI	ACNGT	2 cut(s)	173, 842
TaiI	ACGT	3 cut(s)	112, 322, 883
TaqI	TCGA	4 cut(s)	53, 59, 782, 829
TasI	AATT	6 cut(s)	91, 243, 378, 440, 527, 809
TatI	WGTACW	2 cut(s)	168, 642
TfiI	GAWTC	1 cut(s)	784
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	2 cut(s)	306, 712
TseFI	GTSAC	2 cut(s)	320, 435
TseI	GCWGC	5 cut(s)	44, 215, 601, 857, 868
Tsp45I	GTSAC	2 cut(s)	320, 435
TspDTI	ATGAA	2 cut(s)	119, 768
TspRI	CASTG	2 cut(s)	306, 712
Van91I	CCANNNNNTGG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	308
XceI	RCATGY	2 cut(s)	482, 695
XspI	CTAG	3 cut(s)	78, 344, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.