Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

51502626 .. 51503270

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0403200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCCTGGAGAAAATGAAAAGAAATCTTTAAATCCTAAGATGGGACCTTGGATGATCATGAATTACAAGAACAGGAAAGGGAACAATGCTAATCAAGCCTCTGCAAAAGGAAAAGGGTCTTATGGTTCGAGATTTGCACCCTTGCAAACTGAGGATATTGAAGAGAAAAGTGACACTGCTAAAAAGGCCACCCCTGTGTCTAAGCCTATTTTTGTCTCTGTTGATAGTGCAAGTGAACCTAAAATTGTTAAAGTGTGGAAGCAGGTGCAGGATAAGGCTGCAAAGTTAGCAGCTAAGGAATCAAAATTGAAAGGCAAGAGTGTTGTGCCCAGCTCCCCTATGAATGCCAGGAAAGGTTTGTCGAAAACTAGGTTACCTCTCAAAGAAATTTCAAATAATGACAATATTACTGTCAGTGATGCATCCACATCAAAATCAAAAAAGGGTGATGTGAAGGGAAACAAGCCTTTTGAATTTGATGCTTCTAAGAATCTGGCTTCTTTCTCCTTTATGAATGGTGTCTTTAAGGGTGGTACCCCTGGAGGTAACTCTTTATCTGATAGTGATCTAAAACTCCCAGCCACGACTTTTATTGCTACTCTTGGTAATGCACCTCCTGAGGAAGTGCTGGCGTCAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

214

Amino Acids

22.86

Weight (kDa)

9.84

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AcsI	RAATTY	2 cut(s)	387, 473
AcyI	GRCGYC	1 cut(s)	632
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	161, 310, 393, 473
AjnI	CCWGG	3 cut(s)	4, 347, 538
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	293, 333
AluI	AGCT	2 cut(s)	293, 333
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	278, 290
ApoI	RAATTY	2 cut(s)	387, 473
Asp718I	GGTACC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	618
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	265, 302
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	6, 349, 540
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	253
BisI	GCNGC	2 cut(s)	279, 291
BlsI	GCNGC	2 cut(s)	280, 292
Bme1390I	CCNGG	3 cut(s)	6, 349, 540
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	45, 535
BmrFI	CCNGG	3 cut(s)	6, 349, 540
BmsI	GCATC	3 cut(s)	409, 431, 469
BpmI	CTGGAG	2 cut(s)	27, 561
Bpu10I	CCTNAGC	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	564
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	47, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	564
BseBI	CCWGG	3 cut(s)	6, 349, 540
BseDI	CCNNGG	2 cut(s)	47, 538
BseGI	GGATG	2 cut(s)	57, 422
BseJI	GATNNNNATC	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	141, 609
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	265, 302
BseYI	CCCAGC	2 cut(s)	329, 577
BsgI	GTGCAG	1 cut(s)	287
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	54, 565
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	142, 610
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	45, 535
BspMI	ACCTGC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	533
BssECI	CCNNGG	2 cut(s)	47, 538
BssMI	GATC	2 cut(s)	54, 565
BssNI	GRCGYC	1 cut(s)	632
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	3 cut(s)	6, 349, 540
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	6 cut(s)	36, 150, 201, 294, 486, 618
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	57, 422
BstKTI	GATC	2 cut(s)	57, 568
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	54, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 185, 287
BstNI	CCWGG	3 cut(s)	6, 349, 540
BstPI	GGTNACC	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	4, 347, 538
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	265, 302
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	57, 422
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	174, 421
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	630
CciI	TCATGA	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	98, 188, 205, 278, 293, 333, 466, 497, 581
CviKI_1	RGCY	9 cut(s)	98, 188, 205, 278, 293, 333, 466, 497, 581
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	6 cut(s)	36, 150, 201, 294, 486, 618
DpnI	GATC	2 cut(s)	56, 567
DpnII	GATC	2 cut(s)	54, 565
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	618
Eco91I	GGTNACC	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	4, 347, 538
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	61
FaiI	YATR	5 cut(s)	59, 123, 341, 512, 643
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	1 cut(s)	57
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	279, 291
FokI	GGATG	2 cut(s)	64, 409
Fsp4HI	GCNGC	2 cut(s)	279, 291
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	279, 291
GsaI	CCCAGC	2 cut(s)	333, 581
GsuI	CTGGAG	2 cut(s)	27, 561
HaeIII	GGCC	1 cut(s)	188
HgaI	GACGC	1 cut(s)	621
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	299, 490
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	3 cut(s)	58, 129, 617
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	8 cut(s)	104, 137, 145, 230, 268, 281, 422, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 185, 287
HpyF3I	CTNAG	6 cut(s)	36, 150, 201, 294, 486, 618
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	1 cut(s)	61
KpnI	GGTACC	1 cut(s)	537
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	54, 565
LmnI	GCTCC	1 cut(s)	338
Lsp1109I	GCAGC	2 cut(s)	265, 302
LweI	GCATC	3 cut(s)	409, 431, 469
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	170, 372, 545
MalI	GATC	2 cut(s)	56, 567
MboI	GATC	2 cut(s)	54, 565
MboII	GAAGA	1 cut(s)	173
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	5 cut(s)	61, 243, 305, 387, 473
MnlI	CCTC	6 cut(s)	109, 145, 387, 536, 613, 624
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	3 cut(s)	29, 249, 525
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	6, 349, 540
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	3 cut(s)	6, 349, 540
MwoI	GCNNNNNNNGC	3 cut(s)	95, 185, 287
NdeII	GATC	2 cut(s)	54, 565
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	45, 535
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	57
PaqCI	CACCTGC	1 cut(s)	253
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	299, 490
PkrI	GCNGC	2 cut(s)	280, 292
PpuMI	RGGWCCY	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	44
Psp6I	CCWGG	3 cut(s)	4, 347, 538
PspEI	GGTNACC	1 cut(s)	372
PspFI	CCCAGC	2 cut(s)	329, 577
PspGI	CCWGG	3 cut(s)	4, 347, 538
PspN4I	GGNNCC	2 cut(s)	45, 535
PspPI	GGNCC	1 cut(s)	44
PspPPI	RGGWCCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	29, 249, 525
SatI	GCNGC	2 cut(s)	279, 291
Sau3AI	GATC	2 cut(s)	54, 565
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	3 cut(s)	6, 349, 540
SduI	GDGCHC	1 cut(s)	330
SfaNI	GCATC	3 cut(s)	409, 431, 469
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	61, 243, 305, 387, 473
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	4, 347, 538
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	2 cut(s)	128, 362
TasI	AATT	5 cut(s)	61, 243, 305, 387, 473
TfiI	GAWTC	2 cut(s)	299, 490
Tru1I	TTAA	3 cut(s)	29, 249, 525
Tru9I	TTAA	3 cut(s)	29, 249, 525
TscAI	CASTG	2 cut(s)	181, 421
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	278, 290
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	4 cut(s)	30, 74, 356, 527
TspRI	CASTG	2 cut(s)	181, 421
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	387, 473
XspI	CTAG	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.